{"id":"https://openalex.org/W2158576281","doi":"https://doi.org/10.1093/bioinformatics/bti829","title":"Quality classification of tandem mass spectrometry data","display_name":"Quality classification of tandem mass spectrometry data","publication_year":2005,"publication_date":"2005-12-13","ids":{"openalex":"https://openalex.org/W2158576281","doi":"https://doi.org/10.1093/bioinformatics/bti829","mag":"2158576281","pmid":"https://pubmed.ncbi.nlm.nih.gov/16352652"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti829","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti829","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007612913","display_name":"Jussi Salmi","orcid":"https://orcid.org/0000-0003-3260-3159"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Jussi Salmi","raw_affiliation_strings":["Department of Information Technology and Turku Centre for Computer Science, University of Turku 1 \u00a0 1 \u00a0 \u00a0 Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Technology and Turku Centre for Computer Science, University of Turku 1 \u00a0 1 \u00a0 \u00a0 Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074228028","display_name":"Robert Moulder","orcid":"https://orcid.org/0000-0003-4742-0566"},"institutions":[{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I4210140120","display_name":"Turku Centre for Biotechnology","ror":"https://ror.org/0421ba211","country_code":"FI","type":"facility","lineage":["https://openalex.org/I4210140120"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Robert Moulder","raw_affiliation_strings":["Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University 2 \u00a0 2 \u00a0 \u00a0 Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University 2 \u00a0 2 \u00a0 \u00a0 Finland","institution_ids":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I4210140120"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043373085","display_name":"Jan\u2010Jonas Fil\u00e9n","orcid":null},"institutions":[{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I4210140120","display_name":"Turku Centre for Biotechnology","ror":"https://ror.org/0421ba211","country_code":"FI","type":"facility","lineage":["https://openalex.org/I4210140120"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jan-Jonas Fil\u00e9n","raw_affiliation_strings":["The National Graduate School in Informational and Structural Biology 3 \u00a0 3 \u00a0 \u00a0 Finland","Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University 2 \u00a0 2 \u00a0 \u00a0 Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The National Graduate School in Informational and Structural Biology 3 \u00a0 3 \u00a0 \u00a0 Finland","institution_ids":[]},{"raw_affiliation_string":"Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University 2 \u00a0 2 \u00a0 \u00a0 Finland","institution_ids":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I4210140120"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010579163","display_name":"Olli Nevalainen","orcid":"https://orcid.org/0000-0002-4826-2929"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Olli S. Nevalainen","raw_affiliation_strings":["Department of Information Technology and Turku Centre for Computer Science, University of Turku 1 \u00a0 1 \u00a0 \u00a0 Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Technology and Turku Centre for Computer Science, University of Turku 1 \u00a0 1 \u00a0 \u00a0 Finland","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071351094","display_name":"Tuula A. Nyman","orcid":"https://orcid.org/0000-0001-8787-5886"},"institutions":[{"id":"https://openalex.org/I2801770344","display_name":"Finnish Institute of Occupational Health","ror":"https://ror.org/030wyr187","country_code":"FI","type":"facility","lineage":["https://openalex.org/I2801770344"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tuula A. Nyman","raw_affiliation_strings":["Finnish Institute of Occupational Health 4 \u00a0 4 \u00a0 \u00a0 Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Finnish Institute of Occupational Health 4 \u00a0 4 \u00a0 \u00a0 Helsinki, Finland","institution_ids":["https://openalex.org/I2801770344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029683473","display_name":"Riitta Lahesmaa","orcid":"https://orcid.org/0000-0002-4782-9567"},"institutions":[{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I4210140120","display_name":"Turku Centre for Biotechnology","ror":"https://ror.org/0421ba211","country_code":"FI","type":"facility","lineage":["https://openalex.org/I4210140120"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Riitta Lahesmaa","raw_affiliation_strings":["Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University 2 \u00a0 2 \u00a0 \u00a0 Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University 2 \u00a0 2 \u00a0 \u00a0 Finland","institution_ids":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I4210140120"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016681267","display_name":"Tero Aittokallio","orcid":"https://orcid.org/0000-0002-0886-9769"},"institutions":[{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I4210140120","display_name":"Turku Centre for Biotechnology","ror":"https://ror.org/0421ba211","country_code":"FI","type":"facility","lineage":["https://openalex.org/I4210140120"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tero Aittokallio","raw_affiliation_strings":["Department of Mathematics, University of Turku 5 \u00a0 5 \u00a0 \u00a0 Finland","Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University 2 \u00a0 2 \u00a0 \u00a0 Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Turku 5 \u00a0 5 \u00a0 \u00a0 Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"Turku Centre for Biotechnology, University of Turku and \u00c5bo Akademi University 2 \u00a0 2 \u00a0 \u00a0 Finland","institution_ids":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I4210140120"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5007612913"],"corresponding_institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":2.0532,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.86844958,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"22","issue":"4","first_page":"400","last_page":"406"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.0017000000225380063,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mascot","display_name":"Mascot","score":0.7090274095535278},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6948824524879456},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6835178732872009},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.5473069548606873},{"id":"https://openalex.org/keywords/tandem-mass-spectrometry","display_name":"Tandem mass spectrometry","score":0.5152090191841125},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4281831979751587},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4213537275791168},{"id":"https://openalex.org/keywords/replicate","display_name":"Replicate","score":0.4196191430091858},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.41640910506248474},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.4102247953414917},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3221481442451477},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32039007544517517},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.29094448685646057},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.16563642024993896},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11907970905303955},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09230610728263855},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08031034469604492}],"concepts":[{"id":"https://openalex.org/C2778160393","wikidata":"https://www.wikidata.org/wiki/Q18670161","display_name":"Mascot","level":2,"score":0.7090274095535278},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6948824524879456},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6835178732872009},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.5473069548606873},{"id":"https://openalex.org/C31827203","wikidata":"https://www.wikidata.org/wiki/Q874296","display_name":"Tandem mass spectrometry","level":3,"score":0.5152090191841125},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4281831979751587},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4213537275791168},{"id":"https://openalex.org/C2781162219","wikidata":"https://www.wikidata.org/wiki/Q26250693","display_name":"Replicate","level":2,"score":0.4196191430091858},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.41640910506248474},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.4102247953414917},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3221481442451477},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32039007544517517},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.29094448685646057},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.16563642024993896},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11907970905303955},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09230610728263855},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08031034469604492},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D045424","descriptor_name":"Complex Mixtures","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D045424","descriptor_name":"Complex Mixtures","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D045424","descriptor_name":"Complex Mixtures","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bti829","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti829","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16352652","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16352652","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Evaluation Study"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.883.1590","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.883.1590","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2005/12/13/bioinformatics.bti829.full.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Decent work and economic growth","id":"https://metadata.un.org/sdg/8","score":0.6899999976158142}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310962","display_name":"Canadian Institute for Theoretical Astrophysics","ror":"https://ror.org/0265wc016"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W649532618","https://openalex.org/W1543113652","https://openalex.org/W1795208453","https://openalex.org/W1968868346","https://openalex.org/W1978576205","https://openalex.org/W1981593008","https://openalex.org/W1996692127","https://openalex.org/W2008317045","https://openalex.org/W2024141877","https://openalex.org/W2026465178","https://openalex.org/W2036466798","https://openalex.org/W2051367768","https://openalex.org/W2072000480","https://openalex.org/W2076404617","https://openalex.org/W2082006641","https://openalex.org/W2092523771","https://openalex.org/W2101095914","https://openalex.org/W2112078820","https://openalex.org/W2123504579","https://openalex.org/W2125055259","https://openalex.org/W2135337307","https://openalex.org/W2138754193","https://openalex.org/W2140191130","https://openalex.org/W2146103026","https://openalex.org/W2466512847","https://openalex.org/W2480069414","https://openalex.org/W2752885492","https://openalex.org/W2911964244","https://openalex.org/W3145128584"],"related_works":["https://openalex.org/W2385312588","https://openalex.org/W2169674474","https://openalex.org/W4382677331","https://openalex.org/W2392571238","https://openalex.org/W2064545789","https://openalex.org/W2103021125","https://openalex.org/W2051901836","https://openalex.org/W2032028529","https://openalex.org/W2004515150","https://openalex.org/W1987445292"],"abstract_inverted_index":{"UNLABELLED:":[0],"Peptide":[1],"identification":[2,15,47,130],"by":[3],"tandem":[4],"mass":[5],"spectrometry":[6],"is":[7,57,72],"an":[8],"important":[9],"tool":[10],"in":[11,45,89],"proteomic":[12,63],"research.":[13],"Powerful":[14],"programs":[16],"exist,":[17],"such":[18],"as":[19],"SEQUEST,":[20],"ProICAT":[21],"and":[22,88,131,164],"Mascot,":[23],"which":[24,124],"can":[25],"relate":[26],"experimental":[27],"spectra":[28,76,111,117,123,132,188],"to":[29,67,73,80,92],"the":[30,41,46,50,54,59,94,97,108,113,151,175,181,186],"theoretical":[31],"ones":[32],"derived":[33,136],"from":[34,96,137,160],"protein":[35],"databases,":[36],"thus":[37],"removing":[38],"much":[39],"of":[40,53,61,110,169],"manual":[42],"input":[43],"needed":[44],"process.":[48],"However,":[49],"time-consuming":[51],"validation":[52,98],"peptide":[55,86,129],"identifications":[56],"still":[58],"bottleneck":[60],"many":[62],"studies.":[64],"One":[65],"way":[66,91],"further":[68],"streamline":[69],"this":[70,90],"process":[71],"remove":[74],"those":[75],"that":[77,133,180],"are":[78,118,134,153],"unlikely":[79],"provide":[81],"a":[82,103,156,166],"confident":[83],"or":[84,139],"valid":[85],"identification,":[87],"reduce":[93],"labour":[95],"phase.":[99],"RESULTS:":[100],"We":[101],"propose":[102],"prefiltering":[104,182],"scheme":[105,183],"for":[106,128,143,150],"evaluating":[107],"quality":[109],"before":[112],"database":[114],"search.":[115],"The":[116,145,177],"classified":[119],"into":[120],"two":[121,187],"classes:":[122],"contain":[125,140],"valuable":[126],"information":[127,142],"not":[135],"peptides":[138],"insufficient":[141],"interpretation.":[144],"different":[146],"spectral":[147],"features":[148],"developed":[149],"classification":[152],"tested":[154],"on":[155,165],"real-life":[157],"material":[158],"originating":[159],"human":[161],"lymphoblast":[162],"samples":[163],"standard":[167],"mixture":[168],"9":[170],"proteins,":[171],"both":[172],"labelled":[173],"with":[174],"ICAT-reagent.":[176],"results":[178],"show":[179],"efficiently":[184],"separates":[185],"classes.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
