{"id":"https://openalex.org/W2152109567","doi":"https://doi.org/10.1093/bioinformatics/bti814","title":"VIS-O-BAC: exploratory visualization of functional genome studies from bacteria","display_name":"VIS-O-BAC: exploratory visualization of functional genome studies from bacteria","publication_year":2005,"publication_date":"2005-12-08","ids":{"openalex":"https://openalex.org/W2152109567","doi":"https://doi.org/10.1093/bioinformatics/bti814","mag":"2152109567","pmid":"https://pubmed.ncbi.nlm.nih.gov/16339284"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti814","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti814","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008139414","display_name":"Guido Dieterich","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Guido Dieterich","raw_affiliation_strings":["Department of Cell Biology, Research Centre for Biotechnology (GBF) \u00a0 Mascheroder Weg 1, 38124 Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Biology, Research Centre for Biotechnology (GBF) \u00a0 Mascheroder Weg 1, 38124 Braunschweig, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058652761","display_name":"Uwe K\u00e4rst","orcid":"https://orcid.org/0000-0002-1774-6787"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Uwe K\u00e4rst","raw_affiliation_strings":["Department of Cell Biology, Research Centre for Biotechnology (GBF) \u00a0 Mascheroder Weg 1, 38124 Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Biology, Research Centre for Biotechnology (GBF) \u00a0 Mascheroder Weg 1, 38124 Braunschweig, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111501897","display_name":"J\u00fcrgen Wehland","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J\u00fcrgen Wehland","raw_affiliation_strings":["Department of Cell Biology, Research Centre for Biotechnology (GBF) \u00a0 Mascheroder Weg 1, 38124 Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Biology, Research Centre for Biotechnology (GBF) \u00a0 Mascheroder Weg 1, 38124 Braunschweig, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088547780","display_name":"Lothar J\u00e4nsch","orcid":"https://orcid.org/0000-0002-5655-1181"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Lothar J\u00e4nsch","raw_affiliation_strings":["Department of Cell Biology, Research Centre for Biotechnology (GBF) \u00a0 Mascheroder Weg 1, 38124 Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Biology, Research Centre for Biotechnology (GBF) \u00a0 Mascheroder Weg 1, 38124 Braunschweig, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5088547780"],"corresponding_institution_ids":[],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.237,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.54553675,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"5","first_page":"630","last_page":"631"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4496000111103058,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4496000111103058,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.19769999384880066,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.07779999822378159,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7562837600708008},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5017499923706055},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.4959488809108734},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.48822835087776184},{"id":"https://openalex.org/keywords/exploratory-research","display_name":"Exploratory research","score":0.4518614709377289},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4382326900959015},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4264739155769348},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3018200397491455},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.20473584532737732},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09057348966598511},{"id":"https://openalex.org/keywords/sociology","display_name":"Sociology","score":0.059576570987701416}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7562837600708008},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5017499923706055},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.4959488809108734},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.48822835087776184},{"id":"https://openalex.org/C85973986","wikidata":"https://www.wikidata.org/wiki/Q1091731","display_name":"Exploratory research","level":2,"score":0.4518614709377289},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4382326900959015},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4264739155769348},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3018200397491455},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.20473584532737732},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09057348966598511},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.059576570987701416},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bti814","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti814","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16339284","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16339284","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1963997632","https://openalex.org/W2061636126","https://openalex.org/W2108078368","https://openalex.org/W2140417555","https://openalex.org/W2145477956","https://openalex.org/W2148474327","https://openalex.org/W2150934173","https://openalex.org/W2161062388","https://openalex.org/W2166574880"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W2050457088","https://openalex.org/W3124914020","https://openalex.org/W2354441856","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2121496884"],"abstract_inverted_index":{"UNLABELLED:":[0],"The":[1,96,116],"visualization-aided":[2],"exploration":[3],"of":[4,22,42,82,124,130],"complex":[5],"datasets":[6,58],"will":[7],"allow":[8],"the":[9,39,75,80,88,122,128],"research":[10],"community":[11],"to":[12,18,70],"formulate":[13],"novel":[14],"functional":[15,40,109],"hypotheses":[16],"leading":[17],"a":[19,32,54],"better":[20],"understanding":[21],"biological":[23,132],"processes":[24],"at":[25,142],"all":[26],"levels.":[27],"Therefore,":[28],"we":[29],"have":[30],"developed":[31],"web":[33],"resource":[34],"termed":[35],"VIS-O-BAC":[36],"designed":[37],"for":[38,45],"investigation":[41],"expression":[43,106],"data":[44,107,114,139],"model":[46],"systems,":[47],"such":[48],"as":[49],"bacterial":[50],"pathogens":[51],"based":[52],"on":[53],"graphical":[55,117],"display.":[56],"Genome-scale":[57],"derived":[59],"from":[60,111],"typical":[61],"'omic'":[62],"approaches":[63],"can":[64,99],"directly":[65],"be":[66,100],"explored":[67],"with":[68,91],"respect":[69],"three":[71],"biologically":[72],"relevant":[73],"aspects,":[74],"genome":[76],"structure":[77],"(operon":[78],"organization),":[79],"organization":[81],"genes":[83],"in":[84,102],"pathways":[85],"(KEGG)":[86],"and":[87,104,108,127],"gene":[89],"function":[90],"Gene":[92],"Ontology":[93],"(GO)":[94],"terms.":[95],"integrated":[97],"viewers":[98],"used":[101],"parallel":[103],"combine":[105],"annotations":[110],"different":[112],"external":[113],"repositories.":[115],"visualizations":[118],"evidently":[119],"accelerate":[120],"both":[121],"validation":[123],"regulatory":[125],"information":[126],"detection":[129],"affected":[131],"processes.":[133],"AVAILABILITY:":[134],"http://leger2.gbf.de/cgi-bin/vis-o-bac.pl.":[135],"SUPPLEMENTARY":[136],"INFORMATION:":[137],"Supplementary":[138],"are":[140],"available":[141],"Bioinformatics":[143],"online.":[144]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
