{"id":"https://openalex.org/W2114370860","doi":"https://doi.org/10.1093/bioinformatics/bti783","title":"Automatic assignment of biomedical categories: toward a generic approach","display_name":"Automatic assignment of biomedical categories: toward a generic approach","publication_year":2005,"publication_date":"2005-11-15","ids":{"openalex":"https://openalex.org/W2114370860","doi":"https://doi.org/10.1093/bioinformatics/bti783","mag":"2114370860","pmid":"https://pubmed.ncbi.nlm.nih.gov/16287934"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti783","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti783","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/6/658/48839321/bioinformatics_22_6_658.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/6/658/48839321/bioinformatics_22_6_658.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[{"id":"https://openalex.org/I6312358","display_name":"Geneva College","ror":"https://ror.org/02vb7sj25","country_code":"US","type":"education","lineage":["https://openalex.org/I6312358"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Patrick Ruch","raw_affiliation_strings":["University Hospitals of Geneva, Medical Informatics Service \u00a0 CH-1201, Geneva","University Hospitals of Geneva, Medical Informatics Service CH-1201, Geneva#TAB#"],"affiliations":[{"raw_affiliation_string":"University Hospitals of Geneva, Medical Informatics Service \u00a0 CH-1201, Geneva","institution_ids":["https://openalex.org/I6312358"]},{"raw_affiliation_string":"University Hospitals of Geneva, Medical Informatics Service CH-1201, Geneva#TAB#","institution_ids":["https://openalex.org/I6312358"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5042384742"],"corresponding_institution_ids":["https://openalex.org/I6312358"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.7975,"has_fulltext":false,"cited_by_count":129,"citation_normalized_percentile":{"value":0.93915634,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"22","issue":"6","first_page":"658","last_page":"664"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8137926459312439},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7355471849441528},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.6812067627906799},{"id":"https://openalex.org/keywords/text-categorization","display_name":"Text categorization","score":0.5681563019752502},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5635573863983154},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.5490749478340149},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.5405285954475403},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5258936285972595},{"id":"https://openalex.org/keywords/vector-space-model","display_name":"Vector space model","score":0.5178354382514954},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.5076762437820435},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.4944467544555664},{"id":"https://openalex.org/keywords/phrase","display_name":"Phrase","score":0.47407570481300354},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4714166820049286},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.43625402450561523},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36715418100357056}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8137926459312439},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7355471849441528},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.6812067627906799},{"id":"https://openalex.org/C2986744138","wikidata":"https://www.wikidata.org/wiki/Q302088","display_name":"Text categorization","level":3,"score":0.5681563019752502},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5635573863983154},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.5490749478340149},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.5405285954475403},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5258936285972595},{"id":"https://openalex.org/C89686163","wikidata":"https://www.wikidata.org/wiki/Q1187982","display_name":"Vector space model","level":2,"score":0.5178354382514954},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.5076762437820435},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.4944467544555664},{"id":"https://openalex.org/C2776224158","wikidata":"https://www.wikidata.org/wiki/Q187931","display_name":"Phrase","level":2,"score":0.47407570481300354},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4714166820049286},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.43625402450561523},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36715418100357056},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bti783","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti783","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/6/658/48839321/bioinformatics_22_6_658.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16287934","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16287934","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:doc.rero.ch:295700","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti783","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti783","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/6/658/48839321/bioinformatics_22_6_658.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8299999833106995,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320332382","display_name":"Oak Ridge Institute for Science and Education","ror":"https://ror.org/0526p1y61"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2114370860.pdf","grobid_xml":"https://content.openalex.org/works/W2114370860.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W8870360","https://openalex.org/W27344939","https://openalex.org/W49205724","https://openalex.org/W100370533","https://openalex.org/W124454490","https://openalex.org/W254094495","https://openalex.org/W263845233","https://openalex.org/W1480871907","https://openalex.org/W1529205966","https://openalex.org/W1550518777","https://openalex.org/W1553199198","https://openalex.org/W1553262832","https://openalex.org/W1557222152","https://openalex.org/W1575972883","https://openalex.org/W1576520375","https://openalex.org/W1582612602","https://openalex.org/W1604938182","https://openalex.org/W1760082936","https://openalex.org/W1970863518","https://openalex.org/W1989568037","https://openalex.org/W1994559819","https://openalex.org/W1995616412","https://openalex.org/W2000569744","https://openalex.org/W2060216474","https://openalex.org/W2060553481","https://openalex.org/W2066066594","https://openalex.org/W2069334446","https://openalex.org/W2071664212","https://openalex.org/W2075893676","https://openalex.org/W2092616252","https://openalex.org/W2097898123","https://openalex.org/W2101595316","https://openalex.org/W2111640074","https://openalex.org/W2114535528","https://openalex.org/W2126276057","https://openalex.org/W2140785063","https://openalex.org/W2153962014","https://openalex.org/W2340777861","https://openalex.org/W4234200495","https://openalex.org/W4245322178","https://openalex.org/W4285719527","https://openalex.org/W6600367688","https://openalex.org/W6601095967","https://openalex.org/W6601975506","https://openalex.org/W6605021222","https://openalex.org/W6609746230","https://openalex.org/W6628676562","https://openalex.org/W6628971867","https://openalex.org/W6631739990","https://openalex.org/W6633124968","https://openalex.org/W6633132524","https://openalex.org/W6634430668","https://openalex.org/W6634442568","https://openalex.org/W6637844694","https://openalex.org/W6647971942","https://openalex.org/W6650218246","https://openalex.org/W6665863920","https://openalex.org/W6668334885","https://openalex.org/W6673471769","https://openalex.org/W6682398386"],"related_works":["https://openalex.org/W2052121952","https://openalex.org/W1988809668","https://openalex.org/W302910452","https://openalex.org/W2094694265","https://openalex.org/W4245710446","https://openalex.org/W2044379223","https://openalex.org/W4239172538","https://openalex.org/W145691175","https://openalex.org/W2811247479","https://openalex.org/W2136454756"],"abstract_inverted_index":{"Results":[0],"show":[1],"the":[2,16,20,24],"effectiveness":[3],"of":[4,19],"phrase":[5],"indexing":[6],"for":[7,35,39,45],"both":[8],"GO":[9],"and":[10],"MeSH":[11,36],"categorization,":[12],"but":[13],"we":[14],"observe":[15],"categorization":[17],"power":[18],"tool":[21],"depends":[22],"on":[23,48],"controlled":[25],"vocabulary:":[26],"precision":[27],"at":[28],"high":[29],"ranks":[30],"ranges":[31],"from":[32],"above":[33],"90%":[34],"to":[37],"<20%":[38],"GO,":[40],"establishing":[41],"a":[42],"new":[43],"baseline":[44],"categorizers":[46],"based":[47],"retrieval":[49],"methods.":[50]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":18}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
