{"id":"https://openalex.org/W2162677285","doi":"https://doi.org/10.1093/bioinformatics/bti754","title":"GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags","display_name":"GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags","publication_year":2005,"publication_date":"2005-11-02","ids":{"openalex":"https://openalex.org/W2162677285","doi":"https://doi.org/10.1093/bioinformatics/bti754","mag":"2162677285","pmid":"https://pubmed.ncbi.nlm.nih.gov/16267081"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti754","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti754","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/4/497/48838849/bioinformatics_22_4_497.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/4/497/48838849/bioinformatics_22_4_497.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086235625","display_name":"Tiziana Castrignan\u00f2","orcid":"https://orcid.org/0000-0002-0689-6720"},"institutions":[{"id":"https://openalex.org/I4210162714","display_name":"Centro Interuniversitario di Ricerca Per lo Sviluppo sostenibile","ror":"https://ror.org/05y8mf384","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210162714"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Tiziana Castrignan\u00f2","raw_affiliation_strings":["Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0e Ricerca, CASPUR 1 \u00a0 1 \u00a0 \u00a0 Rome, Italy"],"affiliations":[{"raw_affiliation_string":"Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0e Ricerca, CASPUR 1 \u00a0 1 \u00a0 \u00a0 Rome, Italy","institution_ids":["https://openalex.org/I4210162714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110358657","display_name":"Paolo D\u2019Onorio De Meo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162714","display_name":"Centro Interuniversitario di Ricerca Per lo Sviluppo sostenibile","ror":"https://ror.org/05y8mf384","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210162714"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo D'Onorio De Meo","raw_affiliation_strings":["Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0e Ricerca, CASPUR 1 \u00a0 1 \u00a0 \u00a0 Rome, Italy"],"affiliations":[{"raw_affiliation_string":"Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0e Ricerca, CASPUR 1 \u00a0 1 \u00a0 \u00a0 Rome, Italy","institution_ids":["https://openalex.org/I4210162714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082373890","display_name":"Giorgio Grillo","orcid":"https://orcid.org/0000-0002-0137-5811"},"institutions":[{"id":"https://openalex.org/I4210124735","display_name":"Istituto per le Tecnologie Didattiche","ror":"https://ror.org/02xz4xc25","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210124735","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giorgio Grillo","raw_affiliation_strings":["Istituto Tecnologie Biomediche, Sede di Bari 2 \u00a0 2 \u00a0 \u00a0 Consiglio Nazionale delle Ricerche, Italy"],"affiliations":[{"raw_affiliation_string":"Istituto Tecnologie Biomediche, Sede di Bari 2 \u00a0 2 \u00a0 \u00a0 Consiglio Nazionale delle Ricerche, Italy","institution_ids":["https://openalex.org/I4210124735"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071448625","display_name":"Sabino Liuni","orcid":"https://orcid.org/0000-0002-4444-9702"},"institutions":[{"id":"https://openalex.org/I4210124735","display_name":"Istituto per le Tecnologie Didattiche","ror":"https://ror.org/02xz4xc25","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210124735","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Sabino Liuni","raw_affiliation_strings":["Istituto Tecnologie Biomediche, Sede di Bari 2 \u00a0 2 \u00a0 \u00a0 Consiglio Nazionale delle Ricerche, Italy"],"affiliations":[{"raw_affiliation_string":"Istituto Tecnologie Biomediche, Sede di Bari 2 \u00a0 2 \u00a0 \u00a0 Consiglio Nazionale delle Ricerche, Italy","institution_ids":["https://openalex.org/I4210124735"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048693547","display_name":"Flavio Mignone","orcid":"https://orcid.org/0000-0002-4437-7817"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Flavio Mignone","raw_affiliation_strings":["University of Milan, Dipartimento di Scienze Biomolecolari e Biotecnologie 3 \u00a0 3 \u00a0 \u00a0 via Celoria 26, Milan 20133, Italy"],"affiliations":[{"raw_affiliation_string":"University of Milan, Dipartimento di Scienze Biomolecolari e Biotecnologie 3 \u00a0 3 \u00a0 \u00a0 via Celoria 26, Milan 20133, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036606600","display_name":"Ivano Giuseppe Talamo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162714","display_name":"Centro Interuniversitario di Ricerca Per lo Sviluppo sostenibile","ror":"https://ror.org/05y8mf384","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210162714"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ivano Giuseppe Talamo","raw_affiliation_strings":["Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0e Ricerca, CASPUR 1 \u00a0 1 \u00a0 \u00a0 Rome, Italy"],"affiliations":[{"raw_affiliation_string":"Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universit\u00e0e Ricerca, CASPUR 1 \u00a0 1 \u00a0 \u00a0 Rome, Italy","institution_ids":["https://openalex.org/I4210162714"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005312066","display_name":"Graziano Pesole","orcid":"https://orcid.org/0000-0003-3663-0859"},"institutions":[{"id":"https://openalex.org/I4210124735","display_name":"Istituto per le Tecnologie Didattiche","ror":"https://ror.org/02xz4xc25","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210124735","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Graziano Pesole","raw_affiliation_strings":["Istituto Tecnologie Biomediche, Sede di Bari 2 \u00a0 2 \u00a0 \u00a0 Consiglio Nazionale delle Ricerche, Italy","University of Milan, Dipartimento di Scienze Biomolecolari e Biotecnologie 3 \u00a0 3 \u00a0 \u00a0 via Celoria 26, Milan 20133, Italy"],"affiliations":[{"raw_affiliation_string":"Istituto Tecnologie Biomediche, Sede di Bari 2 \u00a0 2 \u00a0 \u00a0 Consiglio Nazionale delle Ricerche, Italy","institution_ids":["https://openalex.org/I4210124735"]},{"raw_affiliation_string":"University of Milan, Dipartimento di Scienze Biomolecolari e Biotecnologie 3 \u00a0 3 \u00a0 \u00a0 via Celoria 26, Milan 20133, Italy","institution_ids":["https://openalex.org/I189158943"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5005312066"],"corresponding_institution_ids":["https://openalex.org/I189158943","https://openalex.org/I4210124735"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2461,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.55897856,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"22","issue":"4","first_page":"497","last_page":"499"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7097265720367432},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6354299187660217},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.6087058186531067},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5301923155784607},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4938824772834778},{"id":"https://openalex.org/keywords/coding-region","display_name":"Coding region","score":0.4726021885871887},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4601282775402069},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.43396812677383423},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30914121866226196},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29673683643341064},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16880342364311218},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.0950864851474762},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07750362157821655},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07330191135406494}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7097265720367432},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6354299187660217},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.6087058186531067},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5301923155784607},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4938824772834778},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.4726021885871887},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4601282775402069},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.43396812677383423},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30914121866226196},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29673683643341064},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16880342364311218},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0950864851474762},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07750362157821655},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07330191135406494},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bti754","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti754","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/4/497/48838849/bioinformatics_22_4_497.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16267081","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16267081","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ricerca.uniba.it:11586/23051","is_oa":false,"landing_page_url":"http://hdl.handle.net/11586/23051","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:137547","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/137547","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti754","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti754","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/4/497/48838849/bioinformatics_22_4_497.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162677285.pdf","grobid_xml":"https://content.openalex.org/works/W2162677285.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1986234964","https://openalex.org/W2027780439","https://openalex.org/W2085412309","https://openalex.org/W2115769169","https://openalex.org/W2136145671","https://openalex.org/W2168783124","https://openalex.org/W4248160505","https://openalex.org/W4248758183","https://openalex.org/W4293196852","https://openalex.org/W6842402754"],"related_works":["https://openalex.org/W2618286804","https://openalex.org/W2329643025","https://openalex.org/W3131163342","https://openalex.org/W2166271660","https://openalex.org/W2092256833","https://openalex.org/W2142369114","https://openalex.org/W2002770077","https://openalex.org/W2361728394","https://openalex.org/W2352631095","https://openalex.org/W2408577762"],"abstract_inverted_index":{"GenoMiner":[0,114],"is":[1,46],"a":[2,36,68,77,109,124,131,135],"software":[3],"tool":[4],"that":[5],"searches":[6],"for":[7],"regions":[8,33,56,88],"of":[9,38,54,74,96,102,108,126],"similarity":[10],"between":[11,82],"user-submitted":[12],"genome":[13,20,128],"or":[14,41,99],"transcript":[15],"sequences":[16],"and":[17,34,85,93],"user-specified":[18],"whole":[19],"assemblies.":[21],"The":[22,44],"program":[23],"then":[24],"identifies":[25],"conserved":[26],"sequence":[27,55,61,122],"tags":[28],"(CSTs)":[29],"in":[30,62,89,130],"these":[31],"homologous":[32,57,87],"provides":[35],"prediction":[37],"their":[39],"coding":[40,98,111],"non-coding":[42,100],"nature.":[43],"analysis":[45],"carried":[47],"out":[48],"through":[49,105],"three":[50],"steps:":[51],"(1)":[52],"definition":[53],"to":[58,118],"the":[59,63,83,86,90,97,106,116,120],"query":[60,84,121],"selected":[64],"target":[65,91],"genomes":[66,92],"by":[67,76],"fast":[69],"BLAT":[70],"alignment;":[71],"(2)":[72],"identification":[73],"CSTs":[75,104],"more":[78],"sensitive":[79],"BLAST-like":[80],"alignment":[81],"(3)":[94],"assessment":[95],"nature":[101],"detected":[103],"computation":[107],"suitable":[110],"potential":[112],"score.":[113],"allows":[115],"user":[117],"search":[119],"against":[123],"number":[125],"vertebrate":[127],"assemblies":[129],"single":[132],"run":[133],"providing":[134],"user-friendly":[136],"graphical":[137],"output.":[138]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
