{"id":"https://openalex.org/W2162829784","doi":"https://doi.org/10.1093/bioinformatics/bti731","title":"Sequence features of DNA binding sites reveal structural class of associated transcription factor","display_name":"Sequence features of DNA binding sites reveal structural class of associated transcription factor","publication_year":2005,"publication_date":"2005-11-02","ids":{"openalex":"https://openalex.org/W2162829784","doi":"https://doi.org/10.1093/bioinformatics/bti731","mag":"2162829784","pmid":"https://pubmed.ncbi.nlm.nih.gov/16267080"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti731","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti731","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078875370","display_name":"Leelavati Narlikar","orcid":"https://orcid.org/0000-0001-6820-1878"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leelavati Narlikar","raw_affiliation_strings":["Duke University, Department of Computer Science \u00a0 Box 90129, Durham, NC 27708, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Duke University, Department of Computer Science \u00a0 Box 90129, Durham, NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026273992","display_name":"Alexander J. Hartemink","orcid":"https://orcid.org/0000-0002-1292-2606"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander J. Hartemink","raw_affiliation_strings":["Duke University, Department of Computer Science \u00a0 Box 90129, Durham, NC 27708, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Duke University, Department of Computer Science \u00a0 Box 90129, Durham, NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I170897317"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":2.5095,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.89442212,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"22","issue":"2","first_page":"157","last_page":"163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9638000130653381,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9638000130653381,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.02630000002682209,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.0013000000035390258,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.6487010717391968},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6213003993034363},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5868690013885498},{"id":"https://openalex.org/keywords/zinc-finger","display_name":"Zinc finger","score":0.5866785049438477},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5457224249839783},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.540963888168335},{"id":"https://openalex.org/keywords/leucine-zipper","display_name":"Leucine zipper","score":0.5251222252845764},{"id":"https://openalex.org/keywords/basic-helix-loop-helix-leucine-zipper-transcription-factors","display_name":"Basic helix-loop-helix leucine zipper transcription factors","score":0.5070860385894775},{"id":"https://openalex.org/keywords/dna-binding-domain","display_name":"DNA-binding domain","score":0.43244558572769165},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.43186822533607483},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42200303077697754},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4009445309638977},{"id":"https://openalex.org/keywords/dna-binding-protein","display_name":"DNA-binding protein","score":0.39822885394096375},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.25053584575653076},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1975870132446289},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.19505524635314941},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.14708340167999268}],"concepts":[{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6487010717391968},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6213003993034363},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5868690013885498},{"id":"https://openalex.org/C24284526","wikidata":"https://www.wikidata.org/wiki/Q204785","display_name":"Zinc finger","level":4,"score":0.5866785049438477},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5457224249839783},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.540963888168335},{"id":"https://openalex.org/C156860981","wikidata":"https://www.wikidata.org/wiki/Q2565229","display_name":"Leucine zipper","level":4,"score":0.5251222252845764},{"id":"https://openalex.org/C202908374","wikidata":"https://www.wikidata.org/wiki/Q4867030","display_name":"Basic helix-loop-helix leucine zipper transcription factors","level":5,"score":0.5070860385894775},{"id":"https://openalex.org/C33987129","wikidata":"https://www.wikidata.org/wiki/Q13479514","display_name":"DNA-binding domain","level":4,"score":0.43244558572769165},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.43186822533607483},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42200303077697754},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4009445309638977},{"id":"https://openalex.org/C94966510","wikidata":"https://www.wikidata.org/wiki/Q2252764","display_name":"DNA-binding protein","level":4,"score":0.39822885394096375},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.25053584575653076},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1975870132446289},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.19505524635314941},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.14708340167999268}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bti731","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti731","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16267080","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16267080","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Evaluation Study"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.128.6818","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.128.6818","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.duke.edu/~amink/publications/manuscripts/hartemink06.bioinfo.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306151","display_name":"Alfred P. Sloan Foundation","ror":"https://ror.org/052csg198"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1592870802","https://openalex.org/W1632044028","https://openalex.org/W1824346003","https://openalex.org/W2003967338","https://openalex.org/W2011873184","https://openalex.org/W2027662098","https://openalex.org/W2033765726","https://openalex.org/W2035564383","https://openalex.org/W2046048837","https://openalex.org/W2054624670","https://openalex.org/W2055660520","https://openalex.org/W2070198921","https://openalex.org/W2072769447","https://openalex.org/W2080498142","https://openalex.org/W2084620487","https://openalex.org/W2084908610","https://openalex.org/W2101025813","https://openalex.org/W2105709412","https://openalex.org/W2108401170","https://openalex.org/W2110403456","https://openalex.org/W2121356022","https://openalex.org/W2131000278","https://openalex.org/W2133335149","https://openalex.org/W2135243774","https://openalex.org/W2140115103","https://openalex.org/W2146393977","https://openalex.org/W2150579376","https://openalex.org/W2152059883","https://openalex.org/W4236463097","https://openalex.org/W4242559633","https://openalex.org/W6635200387","https://openalex.org/W6662254624","https://openalex.org/W6674967471","https://openalex.org/W6679579819","https://openalex.org/W6682240353"],"related_works":["https://openalex.org/W2130551706","https://openalex.org/W2109399660","https://openalex.org/W2006491153","https://openalex.org/W2110972088","https://openalex.org/W2141475773","https://openalex.org/W2343434690","https://openalex.org/W2115770951","https://openalex.org/W1977525264","https://openalex.org/W1544193125","https://openalex.org/W168417434"],"abstract_inverted_index":{"MOTIVATION:":[0],"A":[1],"key":[2],"goal":[3],"in":[4,101,111,140,187],"molecular":[5],"biology":[6],"is":[7,29],"to":[8,36,52,99,132,162,221],"understand":[9],"the":[10,17,30,42,53,82,92,106,112,141,150,164,168,183,239],"mechanisms":[11],"by":[12,116,145],"which":[13,226],"a":[14,74,95,102,127,134,154,172,190,197],"cell":[15],"regulates":[16],"transcription":[18,33],"of":[19,25,32,55,67,84,108,119,137,148,167,175,192,224,241],"its":[20],"genes.":[21],"One":[22],"important":[23],"aspect":[24],"this":[26,123,201],"transcriptional":[27],"regulation":[28],"binding":[31,233],"factors":[34],"(TFs)":[35],"their":[37,48,56],"specific":[38,220],"cis-regulatory":[39,215],"counterparts":[40,50],"on":[41,182],"DNA.":[43],"TFs":[44,78,90,93],"recognize":[45],"and":[46],"bind":[47,98],"DNA":[49,100,113,142,176],"according":[51],"structure":[54,66,83],"DNA-binding":[57,85,165],"domains":[58,69,86],"(e.g.":[59],"zinc":[60],"finger,":[61],"leucine":[62],"zipper,":[63],"homeodomain).":[64],"The":[65],"these":[68,160],"can":[70],"be":[71,236],"used":[72],"as":[73],"basis":[75],"for":[76,200,230,238],"grouping":[77],"into":[79],"classes.":[80],"Although":[81],"varies":[87],"widely":[88],"across":[89],"generally,":[91],"within":[94,214],"particular":[96,173],"class":[97,118,223],"similar":[103],"fashion,":[104],"suggesting":[105],"existence":[107],"class-specific":[109,138],"features":[110,139,161,213],"sequences":[114,143,216],"bound":[115,144],"each":[117,222],"TFs.":[120,194],"RESULTS:":[121],"In":[122],"paper,":[124],"we":[125],"apply":[126],"sparse":[128],"Bayesian":[129],"learning":[130],"algorithm":[131,151,181],"identify":[133,212],"small":[135],"set":[136,174,203],"different":[146],"classes":[147,186],"TFs;":[149],"simultaneously":[152],"learns":[153],"true":[155],"multi-class":[156],"classifier":[157,199],"that":[158,170,204,217],"uses":[159],"predict":[163],"domain":[166],"TF":[169,232],"recognizes":[171],"sequences.":[177],"We":[178,195,210],"train":[179],"our":[180],"six":[184],"largest":[185],"TRANSFAC,":[188],"comprising":[189],"total":[191],"587":[193],"learn":[196],"six-class":[198],"training":[202],"achieves":[205],"87%":[206],"leave-one-out":[207],"cross-validation":[208],"accuracy.":[209],"also":[211],"are":[218],"highly":[219],"TF,":[225],"has":[227],"significant":[228],"implications":[229],"how":[231],"sites":[234],"should":[235],"modeled":[237],"purpose":[240],"motif":[242],"discovery.":[243]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
