{"id":"https://openalex.org/W1994313017","doi":"https://doi.org/10.1093/bioinformatics/bti695","title":"Do you do text?","display_name":"Do you do text?","publication_year":2005,"publication_date":"2005-09-29","ids":{"openalex":"https://openalex.org/W1994313017","doi":"https://doi.org/10.1093/bioinformatics/bti695","mag":"1994313017","pmid":"https://pubmed.ncbi.nlm.nih.gov/16195360"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti695","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti695","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/23/4199/50567311/bioinformatics_21_23_4199.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/23/4199/50567311/bioinformatics_21_23_4199.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017361070","display_name":"Christian Blaschke","orcid":null},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Christian Blaschke","raw_affiliation_strings":["Centro Nacional de Biotecnolog\u00eda, CNB-CSIC Cantoblanco, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Nacional de Biotecnolog\u00eda, CNB-CSIC Cantoblanco, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109982569","display_name":"Alexander Yeh","orcid":null},"institutions":[{"id":"https://openalex.org/I44896327","display_name":"Mitre (United States)","ror":"https://ror.org/03ks2a131","country_code":"US","type":"company","lineage":["https://openalex.org/I44896327"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Yeh","raw_affiliation_strings":["The MITRE Corporation, Bedford, MA, USA and","The MITRE Corporation  Bedford, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The MITRE Corporation, Bedford, MA, USA and","institution_ids":["https://openalex.org/I44896327"]},{"raw_affiliation_string":"The MITRE Corporation  Bedford, MA, USA","institution_ids":["https://openalex.org/I44896327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080732225","display_name":"Evelyn Camon","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Evelyn Camon","raw_affiliation_strings":["EBI-EMBL, Hinxton Campus, UK","EBI-EMBL Hinxton Campus, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EBI-EMBL, Hinxton Campus, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"EBI-EMBL Hinxton Campus, UK#TAB#","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082822281","display_name":"Marc Colosimo","orcid":null},"institutions":[{"id":"https://openalex.org/I44896327","display_name":"Mitre (United States)","ror":"https://ror.org/03ks2a131","country_code":"US","type":"company","lineage":["https://openalex.org/I44896327"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc Colosimo","raw_affiliation_strings":["The MITRE Corporation, Bedford, MA, USA and","The MITRE Corporation  Bedford, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The MITRE Corporation, Bedford, MA, USA and","institution_ids":["https://openalex.org/I44896327"]},{"raw_affiliation_string":"The MITRE Corporation  Bedford, MA, USA","institution_ids":["https://openalex.org/I44896327"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066667859","display_name":"Rolf Apweiler","orcid":"https://orcid.org/0000-0001-7078-200X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rolf Apweiler","raw_affiliation_strings":["EBI-EMBL, Hinxton Campus, UK","EBI-EMBL Hinxton Campus, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EBI-EMBL, Hinxton Campus, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"EBI-EMBL Hinxton Campus, UK#TAB#","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068115280","display_name":"Lynette Hirschman","orcid":"https://orcid.org/0000-0001-8442-0720"},"institutions":[{"id":"https://openalex.org/I44896327","display_name":"Mitre (United States)","ror":"https://ror.org/03ks2a131","country_code":"US","type":"company","lineage":["https://openalex.org/I44896327"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lynette Hirschman","raw_affiliation_strings":["The MITRE Corporation, Bedford, MA, USA and","The MITRE Corporation  Bedford, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The MITRE Corporation, Bedford, MA, USA and","institution_ids":["https://openalex.org/I44896327"]},{"raw_affiliation_string":"The MITRE Corporation  Bedford, MA, USA","institution_ids":["https://openalex.org/I44896327"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I4210104776","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210104776"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alfonso Valencia","raw_affiliation_strings":["Centro Nacional de Biotecnolog a, CNB-CSIC, Cantoblanco, Madrid, Spain,","Centro Nacional de Biotecnolog\u00eda, CNB-CSIC Cantoblanco, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro Nacional de Biotecnolog a, CNB-CSIC, Cantoblanco, Madrid, Spain,","institution_ids":["https://openalex.org/I4210104776"]},{"raw_affiliation_string":"Centro Nacional de Biotecnolog\u00eda, CNB-CSIC Cantoblanco, Madrid, Spain","institution_ids":["https://openalex.org/I4210104776"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":12.8808,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.9797145,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":null,"biblio":{"volume":"21","issue":"23","first_page":"4199","last_page":"4200"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13516","display_name":"Publishing and Scholarly Communication","score":0.03269999846816063,"subfield":{"id":"https://openalex.org/subfields/1207","display_name":"History and Philosophy of Science"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T13516","display_name":"Publishing and Scholarly Communication","score":0.03269999846816063,"subfield":{"id":"https://openalex.org/subfields/1207","display_name":"History and Philosophy of Science"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12648","display_name":"Academic Writing and Publishing","score":0.03220000118017197,"subfield":{"id":"https://openalex.org/subfields/1207","display_name":"History and Philosophy of Science"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13884","display_name":"Educational Leadership and Practices","score":0.01510000042617321,"subfield":{"id":"https://openalex.org/subfields/3304","display_name":"Education"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6000560522079468},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4005311131477356},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32014259696006775}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6000560522079468},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4005311131477356},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32014259696006775}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bti695","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti695","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/23/4199/50567311/bioinformatics_21_23_4199.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16195360","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16195360","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti695","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti695","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/23/4199/50567311/bioinformatics_21_23_4199.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5086724889","display_name":"Evaluating Bioinformatics Technology","funder_award_id":"0326404","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6822354935","display_name":null,"funder_award_id":"EIA-0326404","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320338266","display_name":"Centro Nacional de Biotecnolog\u00eda","ror":"https://ror.org/015w4v032"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1994313017.pdf","grobid_xml":"https://content.openalex.org/works/W1994313017.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"Retrieving":[0],"information":[1,146,232,558,857],"from":[2,252,271,329,357,485,652,683,704,759],"text":[3,129,253,446,461,474,478,852],"has":[4,17,46,571,622,741,754],"become":[5],"an":[6,583],"important":[7],"area":[8,580],"in":[9,34,50,80,111,136,190,197,224,234,277,293,303,386,420,459,523,526,578,722,764,775,833,851,944],"bioinformatics,":[10],"and":[11,62,105,120,177,187,245,283,288,339,350,364,405,427,477,499,587,613,619,646,677,711,717,728,738,781,800,813,836,855,872,880,894,901,921,923,950,954,965],"not":[12,468,532],"too":[13],"surprisingly,":[14],"this":[15,24,376,464,567,579,843],"journal":[16,33],"published":[18,30,625],"more":[19,744,760],"than":[20,753],"30":[21],"papers":[22,621],"on":[23,88,102,168,237,546,707,735],"topic":[25],"since":[26],"the":[27,32,51,70,91,114,128,153,162,166,181,191,201,216,278,289,342,346,354,393,414,434,486,496,500,511,516,528,554,573,605,614,636,644,647,653,666,684,729,748,751,765,769,776,779,782,785,798,801,804,808,834,878,888,891,898,904,909,924,927,959],"first":[28,241,568,910],"article":[29],"by":[31,297,482,544,581,643,791,914,929,946,958],"1998.":[35],"In":[36,74,463,794],"addition,":[37],"ISCB":[38],"(International":[39,100],"Society":[40],"for":[41,56,69,117,152,174,209,254,310,366,370,395,402,407,449,455,492,510,575,675,877,908,918,926],"Computational":[42],"Biology)":[43],"(Author":[44,67,213,306,490,656,669],"Webpage)":[45,61,68,214,491,670],"organized":[47,110,227],"special":[48],"sessions":[49,87],"ISMB":[52],"conferences":[53,79],"(Intelligent":[54],"Systems":[55],"Molecular":[57,300,934],"Biology,":[58],"see":[59],"Author":[60,281,284,611,861],"a":[63,106,294,358,443,450,456,524,538,560,672,698,743,772,788,818],"specialized":[64],"interest":[65,419],"group":[66],"last":[71,217],"five":[72],"years.":[73,219],"parallel,":[75],"major":[76],"computer":[77],"science":[78],"related":[81],"areas":[82,138],"have":[83,184,846],"begun":[84],"to":[85,134,160,164,200,325,368,383,441,594,714,757,840,897,940,952],"include":[86],"biology,":[89],"e.g.":[90],"TREC":[92],"(text":[93],"retrieval":[94,555],"conference)":[95],"Genomics":[96],"track":[97],"(medir.ohsu.edu/\u223cgenomics),":[98],"ICML":[99],"Conference":[101],"Machine":[103],"Learning)":[104],"series":[107],"of":[108,127,139,142,149,155,193,203,207,231,247,267,331,344,360,413,418,445,472,515,541,556,604,617,639,650,690,695,700,747,750,778,784,796,803,811,820,865,882,890,903],"workshops":[109],"association":[112],"with":[113,243],"ACL":[115],"(Association":[116],"Computation":[118],"Linguistics)":[119],"Human":[121],"Language":[122],"Technology":[123],"meetings.":[124],"The":[125,158,240,262,286,308,411,518,863,906,937],"requirements":[126],"mining":[130],"community":[131],"are":[132,172,686,807,829,858],"similar":[133,221,693],"those":[135,400,705,951],"other":[137,416,662,814],"bioinformatics:":[140],"Availability":[141],"high":[143,547],"quality":[144,802],"input":[145,896],"A":[147,601,688],"set":[148],"objective":[150,739],"metrics":[151],"comparison":[154],"different":[156],"methods":[157,618],"need":[159],"involve":[161,430],"biologist":[163],"keep":[165],"focus":[167],"developing":[169],"applications":[170],"that":[171,315,322,375,553,566],"suitable":[173],"end":[175],"users":[176],"biological":[178],"databases.":[179],"Exactly":[180],"same":[182],"issues":[183,266],"been":[185,623,755],"discussed,":[186],"partially":[188],"solved,":[189],"field":[192,835],"protein":[194,210,250,458,497,723],"structure":[195,724],"prediction,":[196,725],"part":[198,945],"thanks":[199],"organization":[202,879],"CASP":[204],"(Critical":[205],"Assessment":[206],"techniques":[208],"Structure":[211],"Prediction)":[212],"during":[215],"10":[218],"With":[220],"evaluation":[222,620,783,881,900],"goals":[223],"mind,":[225],"we":[226,837],"BioCreAtIvE":[228,569,633,812,941],"(critical":[229],"assessment":[230,279,290,570,770,815],"extraction":[233,244,313],"biology),":[235],"focusing":[236,545],"two":[238,535],"tasks.":[239],"dealt":[242],"normalization":[246],"gene":[248,327,726],"or":[249],"names":[251,328,349,397],"three":[255],"model":[256],"organism":[257],"databases":[258],"(fly,":[259],"mouse,":[260],"yeast).":[261],"second":[263,928],"task":[264,911],"addressed":[265],"extracting":[268],"functional":[269,435,557],"annotations":[270],"text.":[272],"Overall,":[273],"27":[274,892],"groups":[275,319,655,691,821],"participated":[276],"(see":[280],"Webpage":[282,862],"Webpage).":[285,307,657],"results":[287,309,355,373,394,551,606,651,786],"were":[291,323,439,467,480,503,521,531,912,942,956],"discussed":[292],"meeting":[295,685],"sponsored":[296],"EMBO":[298],"(European":[299,931],"Biology":[301,935],"Organization),":[302],"Granada,":[304],"Spain":[305],"gene/protein":[311,396],"name":[312,498],"showed":[314],"at":[316,334,610,860],"least":[317],"four":[318],"provided":[320,507,537,642,742,913],"systems":[321,438,506,536,597],"able":[324],"extract":[326],"sentences":[330],"MEDLINE":[332],"abstracts":[333],"over":[335],"80%":[336],"balanced":[337,362],"precision":[338,363],"recall.":[340],"For":[341,433],"subtask":[343,525],"recognizing":[345],"relation":[347],"between":[348],"normalized":[351],"database":[352],"identifiers,":[353],"ranged":[356,703],"maximum":[359],"92%":[361],"recall":[365],"yeast":[367],"79%":[369],"mouse.":[371],"These":[372,550,702],"indicate":[374,552],"technology":[377],"may":[378],"now":[379],"be":[380,384,608,825],"mature":[381],"enough":[382],"used":[385,721],"production":[387],"environments":[388],"(e.g.":[389],"document":[390],"retrieval).":[391],"However,":[392],"lag":[398],"behind":[399],"obtained":[401],"identifying":[403],"persons":[404],"locations":[406],"online":[408],"news":[409],"(90\u201395%).":[410],"identification":[412],"many":[415],"entities":[417],"biology":[421,719],"(chemical":[422],"compounds,":[423],"tissues,":[424],"diseases,":[425],"species":[426],"others)":[428],"will":[429,591,660],"additional":[431,856],"challenges.":[432],"annotation":[436,454,488,502],"task,":[437],"asked":[440],"identify":[442],"segment":[444],"as":[447,665,671,885],"evidence":[448,479,509],"GO":[451,487,501,512,529],"(Gene":[452],"Ontology)":[453],"given":[457,469],"full":[460,615],"articles.":[462],"case,":[465],"participants":[466],"training":[470,586,676],"examples":[471],"identified":[473],"segments.":[475],"Annotations":[476],"reviewed":[481],"expert":[483],"annotators":[484],"team":[489],"validity.":[493],"When":[494],"both":[495],"given,":[504],"several":[505],"correct":[508,542],"predictions":[513,543],"25\u201330%":[514],"time.":[517],"average":[519],"performances":[520],"lower":[522],"which":[527,590],"codes":[530],"given.":[533],"Interestingly,":[534],"higher":[539],"rate":[540],"confidence":[548],"cases.":[549],"is":[559],"challenging":[561],"problem.":[562],"We":[563],"believe,":[564],"however,":[565],"laid":[572],"foundation":[574],"rapid":[576],"progress":[577],"providing":[582],"infrastructure,":[584],"particularly":[585],"test":[588,595],"datasets,":[589,780],"encourage":[592,838],"researchers":[593],"their":[596,895],"against":[598],"these":[599],"datasets.":[600],"technical":[602],"description":[603],"can":[607],"found":[609],"Webpage,":[612],"collection":[616,638,659],"recently":[624],"(BMC":[626],"Bioinformatics,":[627],"2005;":[628],"6":[629],"Suppl.":[630],"1).":[631],"Indeed,":[632,817],"also":[634],"delivered":[635],"associated":[637],"annotated":[640],"data":[641],"organizers":[645],"corresponding":[648],"evaluations":[649,762],"participating":[654],"This":[658],"complement":[661],"datasets":[663,806,907,925],"such":[664],"GENIA":[667],"corpus":[668],"valuable":[673],"resource":[674],"testing":[678],"methods.":[679],"Our":[680],"main":[681,809],"conclusions":[682],"that:":[687],"number":[689,819],"achieved":[692],"levels":[694],"performance,":[696],"using":[697],"variety":[699],"technologies.":[701],"based":[706,734],"natural":[708],"language":[709],"processing":[710],"linguistic":[712],"analysis":[713],"machine":[715],"learning":[716],"computational":[718],"approaches":[720],"finding":[727],"like.":[730],"An":[731],"unbiased":[732],"assessment,":[733],"clear":[736],"standards":[737],"evaluation,":[740],"realistic":[745],"view":[746],"state":[749],"art":[752],"available":[756,805,859],"date":[758],"limited":[761],"reported":[763],"literature.":[766],"Setting":[767],"up":[768],"required":[771,787],"considerable":[773,789,831],"effort":[774,790],"preparation":[777],"human":[792],"experts.":[793],"spite":[795],"this,":[797],"size":[799],"limitation":[810],"initiatives.":[816],"representing":[822],"what":[823],"could":[824],"called":[826],"traditional":[827],"bioinformatics":[828],"experiencing":[830],"success":[832],"you":[839,847],"consider":[841],"exploring":[842],"new":[844],"field:":[845],"tried":[848],"your":[849],"best":[850],"mining?":[853],"Data":[854],"contribution":[864],"Alex":[866],"Morgan,":[867],"John":[868],"Wilbur,":[869],"Lorrie":[870],"Tanabe":[871],"Vivian":[873],"Lee":[874],"was":[875,887],"essential":[876],"BioCreAtIvE.":[883],"Essential,":[884],"well,":[886],"participation":[889],"groups,":[893],"organization,":[899],"discussion":[902],"results.":[905],"NCBI":[915],"(National":[916],"Center":[917],"Biotechnology":[919],"Information)":[920],"MITRE":[922,938],"EBI\u2013EMBL":[930],"Bioinformatics":[932],"Institute\u2013European":[933],"Laboratory).":[936],"contributions":[939],"supported":[943,957],"NSF":[947],"(grant":[948],"EIA-0326404),":[949],"CNB-CSIC":[953],"EBI":[955],"European":[960],"Commission":[961],"(grants":[962],"TEMBLOR":[963],"QLRT-2001-00015":[964],"ORIEL":[966],"IST-2001-32688).":[967]},"counts_by_year":[],"updated_date":"2026-06-17T06:14:20.161405","created_date":"2016-06-24T00:00:00"}
