{"id":"https://openalex.org/W2171591688","doi":"https://doi.org/10.1093/bioinformatics/bti547","title":"DNA-BAR: distinguisher selection for DNA barcoding","display_name":"DNA-BAR: distinguisher selection for DNA barcoding","publication_year":2005,"publication_date":"2005-06-16","ids":{"openalex":"https://openalex.org/W2171591688","doi":"https://doi.org/10.1093/bioinformatics/bti547","mag":"2171591688","pmid":"https://pubmed.ncbi.nlm.nih.gov/15961439"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti547","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti547","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3424/48979497/bioinformatics_21_16_3424.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3424/48979497/bioinformatics_21_16_3424.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061957076","display_name":"Bhaskar DasGupta","orcid":"https://orcid.org/0000-0001-5614-5477"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"B. DasGupta","raw_affiliation_strings":["Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053, USA","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053, USA and"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053, USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053, USA and","institution_ids":["https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035678865","display_name":"Kishori M. Konwar","orcid":"https://orcid.org/0000-0001-5152-4777"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. M. Konwar","raw_affiliation_strings":["Computer Science and Engineering Department, University of Connecticut, 371 Fairfield Road, Unit 2155, Storrs, CT 06269-2155, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Department, University of Connecticut, 371 Fairfield Road, Unit 2155, Storrs, CT 06269-2155, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014788373","display_name":"Ion M\u0103ndoiu","orcid":"https://orcid.org/0000-0002-4818-0237"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"I. I. Mandoiu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5107850016","display_name":"Alex A. Shvartsman","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. A. Shvartsman","raw_affiliation_strings":["Computer Science and Engineering Department, University of Connecticut, 371 Fairfield Road, Unit 2155, Storrs, CT 06269-2155, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Department, University of Connecticut, 371 Fairfield Road, Unit 2155, Storrs, CT 06269-2155, USA","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5061957076"],"corresponding_institution_ids":["https://openalex.org/I39422238"],"apc_list":null,"apc_paid":null,"fwci":1.1393,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.76816879,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"21","issue":"16","first_page":"3424","last_page":"3426"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.754645824432373},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5466039180755615},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5340031385421753},{"id":"https://openalex.org/keywords/genomic-dna","display_name":"genomic DNA","score":0.49019938707351685},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4816269278526306},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.42250093817710876},{"id":"https://openalex.org/keywords/bar","display_name":"Bar (unit)","score":0.4160548150539398},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.41050609946250916},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4032588303089142},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3181888461112976},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11526840925216675},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09255930781364441}],"concepts":[{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.754645824432373},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5466039180755615},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5340031385421753},{"id":"https://openalex.org/C17757408","wikidata":"https://www.wikidata.org/wiki/Q4135516","display_name":"genomic DNA","level":3,"score":0.49019938707351685},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4816269278526306},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.42250093817710876},{"id":"https://openalex.org/C188721877","wikidata":"https://www.wikidata.org/wiki/Q103510","display_name":"Bar (unit)","level":2,"score":0.4160548150539398},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.41050609946250916},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4032588303089142},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3181888461112976},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11526840925216675},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09255930781364441},{"id":"https://openalex.org/C153294291","wikidata":"https://www.wikidata.org/wiki/Q25261","display_name":"Meteorology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017403","descriptor_name":"In Situ Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017403","descriptor_name":"In Situ Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017403","descriptor_name":"In Situ Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bti547","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti547","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3424/48979497/bioinformatics_21_16_3424.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15961439","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15961439","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti547","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti547","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3424/48979497/bioinformatics_21_16_3424.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1171700966","display_name":null,"funder_award_id":"NSF CAREER","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4669348599","display_name":"Collaborative Research: Efficient Combinatorial Algorithms for Several Tiling, Packing and Covering Problems with Rectangles and Hyper-Rectangles","funder_award_id":"0208749","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5964131172","display_name":"Collaborative Research:   Piecewise Linear Hybrid Systems","funder_award_id":"0206795","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6087634221","display_name":"CAREER:  Efficient Algorithms for Computational Problems in Bioinformatics Via Combinatorial and Geometric Techniques","funder_award_id":"0346973","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6671297155","display_name":null,"funder_award_id":"CAREER","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2171591688.pdf","grobid_xml":"https://content.openalex.org/works/W2171591688.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2007407056","https://openalex.org/W2026047255","https://openalex.org/W2040452926","https://openalex.org/W2104308663","https://openalex.org/W2105860012","https://openalex.org/W2146301357","https://openalex.org/W2610851698"],"related_works":["https://openalex.org/W2288263127","https://openalex.org/W2293067204","https://openalex.org/W2091508249","https://openalex.org/W2293163042","https://openalex.org/W1495042958","https://openalex.org/W2494338568","https://openalex.org/W2122678784","https://openalex.org/W2343154456","https://openalex.org/W2382592496","https://openalex.org/W2367024683"],"abstract_inverted_index":{"DNA-BAR":[0,30],"is":[1],"a":[2,32,38],"software":[3],"package":[4],"for":[5,42],"selecting":[6],"DNA":[7],"probes":[8],"(henceforth":[9],"referred":[10],"to":[11],"as":[12,58,60],"distinguishers)":[13],"that":[14],"can":[15],"be":[16],"used":[17],"in":[18],"genomic-based":[19],"identification":[20],"of":[21,27,35],"microorganisms.":[22],"Given":[23],"the":[24,28],"genomic":[25],"sequences":[26],"microorganisms,":[29],"finds":[31],"near-minimum":[33],"number":[34],"distinguishers":[36,46],"yielding":[37],"distinct":[39],"hybridization":[40],"pattern":[41],"each":[43],"microorganism.":[44],"Selected":[45],"satisfy":[47],"user":[48],"specified":[49],"bounds":[50],"on":[51],"length,":[52],"melting":[53],"temperature":[54],"and":[55,62],"GC":[56],"content,":[57],"well":[59],"redundancy":[61],"cross-hybridization":[63],"constraints.":[64]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
