{"id":"https://openalex.org/W2166837073","doi":"https://doi.org/10.1093/bioinformatics/bti545","title":"caBIONet--A .NET wrapper to access and process genomic data stored at the National Cancer Institute's Center for Bioinformatics databases","display_name":"caBIONet--A .NET wrapper to access and process genomic data stored at the National Cancer Institute's Center for Bioinformatics databases","publication_year":2005,"publication_date":"2005-06-16","ids":{"openalex":"https://openalex.org/W2166837073","doi":"https://doi.org/10.1093/bioinformatics/bti545","mag":"2166837073","pmid":"https://pubmed.ncbi.nlm.nih.gov/15961441"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti545","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti545","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3456/48979529/bioinformatics_21_16_3456.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3456/48979529/bioinformatics_21_16_3456.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062102188","display_name":"Piatr Kraj","orcid":null},"institutions":[{"id":"https://openalex.org/I25041050","display_name":"Augusta University","ror":"https://ror.org/012mef835","country_code":"US","type":"education","lineage":["https://openalex.org/I25041050"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"P. Kraj","raw_affiliation_strings":["Institute of Molecular Medicine and Genetics, Medical College of Georgia, Augusta, GA 30912, USA","Institute of Molecular Medicine & Genetics, Medical College of Georgia, Augusta, GA 30912, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine and Genetics, Medical College of Georgia, Augusta, GA 30912, USA","institution_ids":["https://openalex.org/I25041050"]},{"raw_affiliation_string":"Institute of Molecular Medicine & Genetics, Medical College of Georgia, Augusta, GA 30912, USA","institution_ids":["https://openalex.org/I25041050"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057224433","display_name":"Richard McIndoe","orcid":"https://orcid.org/0000-0002-3040-3631"},"institutions":[{"id":"https://openalex.org/I25041050","display_name":"Augusta University","ror":"https://ror.org/012mef835","country_code":"US","type":"education","lineage":["https://openalex.org/I25041050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. A. McIndoe","raw_affiliation_strings":["Center for Biotechnology and Genomic Medicine, Medical College of Georgia  Augusta, GA 30912, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biotechnology and Genomic Medicine, Medical College of Georgia  Augusta, GA 30912, USA","institution_ids":["https://openalex.org/I25041050"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5062102188"],"corresponding_institution_ids":["https://openalex.org/I25041050"],"apc_list":null,"apc_paid":null,"fwci":0.3768,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.60939376,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"21","issue":"16","first_page":"3456","last_page":"3458"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/center","display_name":"Center (category theory)","score":0.7166957855224609},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6578368544578552},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5544374585151672},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5356404781341553},{"id":"https://openalex.org/keywords/information-center","display_name":"Information center","score":0.4191860556602478},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15503749251365662}],"concepts":[{"id":"https://openalex.org/C2779463800","wikidata":"https://www.wikidata.org/wiki/Q5062222","display_name":"Center (category theory)","level":2,"score":0.7166957855224609},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6578368544578552},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5544374585151672},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5356404781341553},{"id":"https://openalex.org/C2989251126","wikidata":"https://www.wikidata.org/wiki/Q18411786","display_name":"Information center","level":3,"score":0.4191860556602478},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15503749251365662},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.0},{"id":"https://openalex.org/C145420912","wikidata":"https://www.wikidata.org/wiki/Q853077","display_name":"Mathematics education","level":1,"score":0.0},{"id":"https://openalex.org/C36727532","wikidata":"https://www.wikidata.org/wiki/Q861399","display_name":"Educational research","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009316","descriptor_name":"National Institutes of Health (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009316","descriptor_name":"National Institutes of Health (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009316","descriptor_name":"National Institutes of Health (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bti545","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti545","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3456/48979529/bioinformatics_21_16_3456.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15961441","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15961441","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti545","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti545","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/16/3456/48979529/bioinformatics_21_16_3456.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.4300000071525574,"display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G4612343413","display_name":null,"funder_award_id":"U01DK60966-01","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"}],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W2120789186"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2228167901","https://openalex.org/W802369555","https://openalex.org/W4248904531","https://openalex.org/W2350447923","https://openalex.org/W2411402148","https://openalex.org/W1971576587","https://openalex.org/W2373492615","https://openalex.org/W3048374221"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,138,163],"National":[2],"Cancer":[3],"Institute's":[4],"Center":[5],"for":[6],"Bioinformatics":[7],"(NCICB)":[8],"has":[9],"developed":[10],"a":[11,116,172],"Java":[12,52],"based":[13,60],"data":[14,49,77,87,132,152],"management":[15],"and":[16,95,106,146,157,169],"information":[17],"system":[18],"called":[19],"caCORE.":[20],"One":[21],"component":[22],"of":[23,108,118,128],"this":[24,65],"software":[25,139,164],"suite":[26],"is":[27,115,140],"the":[28,36,42,48,70,76,81,90,104,130,151],"object":[29,110],"oriented":[30,111],"API":[31,45,66],"(caBIO)":[32],"used":[33,158],"to":[34,63,68,142],"access":[35,47],"rich":[37],"biological":[38],"datasets":[39],"collected":[40],"at":[41],"NCI.":[43],"This":[44],"can":[46,92,154],"using":[50,97],"native":[51],"classes,":[53],"SOAP":[54,71],"requests":[55],"or":[56,72,99],"HTTP":[57,73],"calls.":[58],"Non-Java":[59],"clients":[61],"wanting":[62],"use":[64,69],"have":[67],"interfaces":[74],"with":[75],"being":[78],"returned":[79],"from":[80],"NCI":[82],"servers":[83],"as":[84,171],"an":[85,109],"XML":[86,91,131],"stream.":[88],"Although":[89],"be":[93,155],"read":[94],"manipulated":[96,156],"DOM":[98],"SAX":[100],"parsers,":[101],"one":[102],"loses":[103],"convenience":[105],"usability":[107],"programming":[112],"paradigm.":[113],"caBIONet":[114],"set":[117],".NET":[119,136,161,173],"wrapper":[120],"classes":[121],"(managers,":[122],"genes,":[123],"chromosomes,":[124],"sequences,":[125],"etc.)":[126],"capable":[127],"serializing":[129],"stream":[133],"into":[134],"local":[135,148],"objects.":[137],"able":[141],"search":[143],"NCICB":[144],"databases":[145],"provide":[147],"objects":[149],"representing":[150],"that":[153],"by":[159],"other":[160],"programs.":[162],"was":[165],"written":[166],"in":[167],"C#":[168],"compiled":[170],"DLL.":[174]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}