{"id":"https://openalex.org/W2113955993","doi":"https://doi.org/10.1093/bioinformatics/bti503","title":"MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms","display_name":"MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms","publication_year":2005,"publication_date":"2005-05-26","ids":{"openalex":"https://openalex.org/W2113955993","doi":"https://doi.org/10.1093/bioinformatics/bti503","mag":"2113955993","pmid":"https://pubmed.ncbi.nlm.nih.gov/15919728"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti503","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti503","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/15/3324/6237080/bti503.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/15/3324/6237080/bti503.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085796613","display_name":"Amira Djebbari","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Amira Djebbari","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","The Institute for Genomic Research 9712 Medical Center Drive, Rockville, MD 20850, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research 9712 Medical Center Drive, Rockville, MD 20850, USA#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047309355","display_name":"Svetlana Karamycheva","orcid":"https://orcid.org/0000-0001-9653-8910"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Svetlana Karamycheva","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA,","The Institute for Genomic Research 9712 Medical Center Drive, Rockville, MD 20850, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA,","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research 9712 Medical Center Drive, Rockville, MD 20850, USA#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062895512","display_name":"Eleanor Howe","orcid":"https://orcid.org/0000-0003-3085-9281"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eleanor Howe","raw_affiliation_strings":["Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA, USA","Department of Biostatistics and Computational Biology, Dana-Farber-Cancer-Institute, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA, USA","institution_ids":["https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Department of Biostatistics and Computational Biology, Dana-Farber-Cancer-Institute, Boston, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084245470","display_name":"John Quackenbush","orcid":"https://orcid.org/0000-0002-2702-5879"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"John Quackenbush","raw_affiliation_strings":["The Institute for Genomic Research 9712 Medical Center Drive, Rockville, MD 20850, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research 9712 Medical Center Drive, Rockville, MD 20850, USA#TAB#","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5085796613"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0062,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.74311275,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"21","issue":"15","first_page":"3324","last_page":"3326"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5827347636222839},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5417760610580444},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.535445511341095},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5106809735298157},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5048316121101379},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.475147008895874},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.4567410349845886},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.449550986289978},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.43492767214775085},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4245501458644867},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.41162213683128357},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35344064235687256},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30892741680145264},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.28639334440231323},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23331290483474731},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08674389123916626}],"concepts":[{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5827347636222839},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5417760610580444},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.535445511341095},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5106809735298157},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5048316121101379},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.475147008895874},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.4567410349845886},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.449550986289978},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.43492767214775085},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4245501458644867},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.41162213683128357},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35344064235687256},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30892741680145264},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.28639334440231323},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23331290483474731},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08674389123916626}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001695","descriptor_name":"Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bti503","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti503","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/15/3324/6237080/bti503.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15919728","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15919728","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti503","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti503","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/15/3324/6237080/bti503.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113955993.pdf","grobid_xml":"https://content.openalex.org/works/W2113955993.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W45534775","https://openalex.org/W1566012138","https://openalex.org/W1970018958","https://openalex.org/W2013590760","https://openalex.org/W2045340002","https://openalex.org/W2087141077","https://openalex.org/W2103017472","https://openalex.org/W2106192181","https://openalex.org/W2109363337","https://openalex.org/W2127938920","https://openalex.org/W2131320300","https://openalex.org/W2131924932","https://openalex.org/W2139703939","https://openalex.org/W2144975794","https://openalex.org/W2145701818","https://openalex.org/W2148853951","https://openalex.org/W2164395223","https://openalex.org/W2164429509","https://openalex.org/W2165206687","https://openalex.org/W4232903880"],"related_works":["https://openalex.org/W3152114242","https://openalex.org/W2796636403","https://openalex.org/W170658859","https://openalex.org/W1547158732","https://openalex.org/W2151007749","https://openalex.org/W2028324514","https://openalex.org/W2074092657","https://openalex.org/W4310366902","https://openalex.org/W1889322612","https://openalex.org/W3023720143"],"abstract_inverted_index":{"Results":[0],"from":[1,7],"the":[2,8],"analysis":[3],"of":[4],"significant":[5],"genes":[6],"published":[9],"Ang":[10],"II":[11],"study.":[12]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-07T13:37:22.277990","created_date":"2025-10-10T00:00:00"}