{"id":"https://openalex.org/W2096949174","doi":"https://doi.org/10.1093/bioinformatics/bti491","title":"A criticality-based framework for task composition in multi-agent bioinformatics integration systems","display_name":"A criticality-based framework for task composition in multi-agent bioinformatics integration systems","publication_year":2005,"publication_date":"2005-05-12","ids":{"openalex":"https://openalex.org/W2096949174","doi":"https://doi.org/10.1093/bioinformatics/bti491","mag":"2096949174","pmid":"https://pubmed.ncbi.nlm.nih.gov/15890745"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti491","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti491","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/14/3155/741937/bti491.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/14/3155/741937/bti491.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016410300","display_name":"Konstantinos Karasavvas","orcid":null},"institutions":[{"id":"https://openalex.org/I32062511","display_name":"Heriot-Watt University","ror":"https://ror.org/04mghma93","country_code":"GB","type":"education","lineage":["https://openalex.org/I32062511"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"K. A. Karasavvas","raw_affiliation_strings":["School of Mathematical and Computer Sciences, Heriot-Watt University Edinburgh EH14 4AS, UK. ceekk@macs.hw.ac.uk","School of Mathematical and Computer Sciences, Heriot-Watt University, Edinburgh EH14 4AS, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematical and Computer Sciences, Heriot-Watt University Edinburgh EH14 4AS, UK. ceekk@macs.hw.ac.uk","institution_ids":["https://openalex.org/I32062511"]},{"raw_affiliation_string":"School of Mathematical and Computer Sciences, Heriot-Watt University, Edinburgh EH14 4AS, UK","institution_ids":["https://openalex.org/I32062511"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057893272","display_name":"Richard Baldock","orcid":"https://orcid.org/0000-0003-0332-6877"},"institutions":[{"id":"https://openalex.org/I90344618","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"R. Baldock","raw_affiliation_strings":["Human Genetics Unit, Medical Research Council, Edinburgh EH4 2XU, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genetics Unit, Medical Research Council, Edinburgh EH4 2XU, UK","institution_ids":["https://openalex.org/I90344618"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079735260","display_name":"Albert Burger","orcid":"https://orcid.org/0000-0002-5492-8635"},"institutions":[{"id":"https://openalex.org/I32062511","display_name":"Heriot-Watt University","ror":"https://ror.org/04mghma93","country_code":"GB","type":"education","lineage":["https://openalex.org/I32062511"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"A. Burger","raw_affiliation_strings":["School of Mathematical and Computer Sciences, Heriot-Watt University, Edinburgh EH14 4AS, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematical and Computer Sciences, Heriot-Watt University, Edinburgh EH14 4AS, UK","institution_ids":["https://openalex.org/I32062511"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5016410300"],"corresponding_institution_ids":["https://openalex.org/I32062511"],"apc_list":null,"apc_paid":null,"fwci":3.4296,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.93462699,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"21","issue":"14","first_page":"3155","last_page":"3163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9710000157356262,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9710000157356262,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.003599999938160181,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.0020000000949949026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8344611525535583},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7944531440734863},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.7022890448570251},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6339966654777527},{"id":"https://openalex.org/keywords/criticality","display_name":"Criticality","score":0.4449712634086609},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.43049710988998413},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.41390833258628845},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3543711304664612},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2593867778778076},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.20171064138412476},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.13863766193389893}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8344611525535583},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7944531440734863},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.7022890448570251},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6339966654777527},{"id":"https://openalex.org/C125611927","wikidata":"https://www.wikidata.org/wiki/Q17008131","display_name":"Criticality","level":2,"score":0.4449712634086609},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.43049710988998413},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.41390833258628845},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3543711304664612},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2593867778778076},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.20171064138412476},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.13863766193389893},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C185544564","wikidata":"https://www.wikidata.org/wiki/Q81197","display_name":"Nuclear physics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013647","descriptor_name":"Task Performance and Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013647","descriptor_name":"Task Performance and Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013647","descriptor_name":"Task Performance and Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013647","descriptor_name":"Task Performance and Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bti491","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti491","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/14/3155/741937/bti491.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15890745","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15890745","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti491","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti491","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/14/3155/741937/bti491.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W110459546","https://openalex.org/W1560649687","https://openalex.org/W1561060567","https://openalex.org/W1594751017","https://openalex.org/W1604986327","https://openalex.org/W1638026557","https://openalex.org/W1686236642","https://openalex.org/W1867064747","https://openalex.org/W2002520185","https://openalex.org/W2037898378","https://openalex.org/W2038550763","https://openalex.org/W2043184510","https://openalex.org/W2055043387","https://openalex.org/W2065336344","https://openalex.org/W2072893471","https://openalex.org/W2102697744","https://openalex.org/W2103017472","https://openalex.org/W2107247043","https://openalex.org/W2134435263","https://openalex.org/W2136887407","https://openalex.org/W2141824507","https://openalex.org/W2153476217","https://openalex.org/W2163567045","https://openalex.org/W2168605051","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2081035100","https://openalex.org/W3206324740","https://openalex.org/W2497175360","https://openalex.org/W2081647779","https://openalex.org/W1596201972","https://openalex.org/W2160425906","https://openalex.org/W2521742538","https://openalex.org/W2170678350","https://openalex.org/W2348623649","https://openalex.org/W1485627940"],"abstract_inverted_index":{"MOTIVATION:":[0],"During":[1],"task":[2],"composition,":[3],"such":[4,97,134],"as":[5,126],"can":[6],"be":[7,21,38,156],"found":[8],"in":[9,81,158],"distributed":[10],"query":[11],"processing,":[12],"workflow":[13],"systems":[14],"and":[15,26,113,141],"AI":[16],"planning,":[17],"decisions":[18,98,153],"have":[19],"to":[20,32,61,101,149],"made":[22],"by":[23,28,71],"the":[24,62,94,102,127,159],"system":[25,123],"possibly":[27],"users":[29],"with":[30,99],"respect":[31,100],"how":[33,151],"a":[34,51,82,107,130,142],"given":[35,52],"problem":[36,70],"should":[37],"solved.":[39],"Although":[40],"there":[41],"is":[42,124,147],"often":[43],"more":[44,162],"than":[45],"one":[46],"correct":[47],"way":[48,108],"of":[49,96,109,129,161],"solving":[50],"problem,":[53],"these":[54],"multiple":[55],"solutions":[56],"do":[57],"not":[58,155],"necessarily":[59],"lead":[60],"same":[63],"result.":[64,104],"Some":[65],"researchers":[66],"are":[67],"addressing":[68],"this":[69,86],"providing":[72],"data":[73],"provenance":[74],"information.":[75],"Others":[76],"use":[77],"expert":[78],"advice":[79],"encoded":[80],"supporting":[83],"knowledge-base.":[84],"In":[85],"paper,":[87],"we":[88],"propose":[89,137],"an":[90,138],"approach":[91],"that":[92,132],"assesses":[93],"importance":[95],"overall":[103],"We":[105,136],"present":[106],"measuring":[110],"decision":[111],"criticality":[112],"describe":[114],"its":[115],"potential":[116],"use.":[117],"RESULTS:":[118],"A":[119],"multi-agent":[120],"bioinformatics":[121,144],"integration":[122],"used":[125,148],"basis":[128],"framework":[131],"facilitates":[133],"functionality.":[135],"agent":[139],"architecture,":[140],"concrete":[143],"example":[145],"(prototype)":[146],"show":[150],"certain":[152],"may":[154],"critical":[157],"context":[160],"complex":[163],"tasks.":[164]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
