{"id":"https://openalex.org/W2105106534","doi":"https://doi.org/10.1093/bioinformatics/bti430","title":"Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary","display_name":"Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary","publication_year":2005,"publication_date":"2005-04-07","ids":{"openalex":"https://openalex.org/W2105106534","doi":"https://doi.org/10.1093/bioinformatics/bti430","mag":"2105106534","pmid":"https://pubmed.ncbi.nlm.nih.gov/15817693"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti430","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti430","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/19/3787/48980858/bioinformatics_21_19_3787.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/19/3787/48980858/bioinformatics_21_19_3787.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010889555","display_name":"X. Mao","orcid":"https://orcid.org/0009-0003-0598-3368"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"X. Mao","raw_affiliation_strings":["Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, PR China","Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, 100871, P.R. China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, PR China","institution_ids":[]},{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, 100871, P.R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105471967","display_name":"Tommaso Cai","orcid":"https://orcid.org/0000-0002-7234-3526"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"T. Cai","raw_affiliation_strings":["Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, 100871, P.R. China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, 100871, P.R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074473131","display_name":"J. G. Olyarchuk","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"J. G. Olyarchuk","raw_affiliation_strings":["Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, 100871, P.R. China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, 100871, P.R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108048800","display_name":"L. Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"L. Wei","raw_affiliation_strings":["Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, 100871, P.R. China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, 100871, P.R. China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5010889555"],"corresponding_institution_ids":["https://openalex.org/I20231570"],"apc_list":null,"apc_paid":null,"fwci":6.5828,"has_fulltext":false,"cited_by_count":4144,"citation_normalized_percentile":{"value":0.97605882,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"21","issue":"19","first_page":"3787","last_page":"3793"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.8664939403533936},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.854625940322876},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6295548677444458},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5570138692855835},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.5511568784713745},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.5346400141716003},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5174515843391418},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.49843430519104004},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.4884132742881775},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4817352592945099},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47030967473983765},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.3512941002845764},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3277796506881714},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2647164463996887},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2586996555328369},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.197590172290802},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14172428846359253},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0882178544998169}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.8664939403533936},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.854625940322876},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6295548677444458},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5570138692855835},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.5511568784713745},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.5346400141716003},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5174515843391418},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.49843430519104004},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.4884132742881775},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4817352592945099},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47030967473983765},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.3512941002845764},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3277796506881714},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2647164463996887},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2586996555328369},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.197590172290802},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14172428846359253},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0882178544998169},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bti430","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti430","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/19/3787/48980858/bioinformatics_21_19_3787.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15817693","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15817693","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repository.up.ac.za:2263/3158","is_oa":false,"landing_page_url":"http://hdl.handle.net/2263/3158","pdf_url":null,"source":{"id":"https://openalex.org/S4306401870","display_name":"UpSpace Institutional Repository (University of Pretoria)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I69552723","host_organization_name":"University of Pretoria","host_organization_lineage":["https://openalex.org/I69552723"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Postprint Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti430","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti430","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/19/3787/48980858/bioinformatics_21_19_3787.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2105106534.pdf","grobid_xml":"https://content.openalex.org/works/W2105106534.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1503008736","https://openalex.org/W2007128729","https://openalex.org/W2009696139","https://openalex.org/W2021239799","https://openalex.org/W2053916731","https://openalex.org/W2055043387","https://openalex.org/W2055867223","https://openalex.org/W2064820767","https://openalex.org/W2065702910","https://openalex.org/W2075468840","https://openalex.org/W2099889778","https://openalex.org/W2100474154","https://openalex.org/W2102992354","https://openalex.org/W2103017472","https://openalex.org/W2105381419","https://openalex.org/W2107002333","https://openalex.org/W2107268689","https://openalex.org/W2108401170","https://openalex.org/W2110065044","https://openalex.org/W2122135124","https://openalex.org/W2124388496","https://openalex.org/W2132206153","https://openalex.org/W2133340731","https://openalex.org/W2136947295","https://openalex.org/W2139084975","https://openalex.org/W2139703939","https://openalex.org/W2146119511","https://openalex.org/W2151225518","https://openalex.org/W2152545090","https://openalex.org/W2152607628","https://openalex.org/W2152927202","https://openalex.org/W2158714788","https://openalex.org/W2159482845","https://openalex.org/W2166574880","https://openalex.org/W2997000181","https://openalex.org/W4236236547","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2551839783","https://openalex.org/W4386401670","https://openalex.org/W2956207900","https://openalex.org/W2790781282","https://openalex.org/W4285233331","https://openalex.org/W2110256992","https://openalex.org/W4313887725","https://openalex.org/W2334025507","https://openalex.org/W1984964356","https://openalex.org/W2136890152"],"abstract_inverted_index":{"We":[0,27],"demonstrated":[1],"the":[2,5,11,48,52],"use":[3],"of":[4,10,14,40],"KEGG":[6,12],"Orthology":[7],"(KO),":[8],"part":[9],"suite":[13],"resources,":[15],"as":[16],"an":[17],"alternative":[18],"controlled":[19],"vocabulary":[20],"for":[21],"automated":[22],"annotation":[23,90],"and":[24,45,51,62,71,91],"pathway":[25],"identification.":[26],"developed":[28],"a":[29,38,78],"KO-Based":[30],"Annotation":[31],"System":[32],"(KOBAS)":[33],"that":[34,84],"can":[35,85],"automatically":[36],"annotate":[37],"set":[39],"sequences":[41],"with":[42,67],"KO":[43],"terms":[44],"identify":[46],"both":[47,59],"most":[49],"frequent":[50],"statistically":[53],"significantly":[54,87],"enriched":[55],"pathways.":[56],"Results":[57],"from":[58],"whole":[60],"genome":[61,89],"microarray":[63,92],"gene":[64],"cluster":[65],"annotations":[66],"KOBAS":[68,76],"are":[69],"comparable":[70],"complementary":[72],"to":[73,88],"known":[74],"annotations.":[75],"is":[77],"freely":[79],"available":[80],"stand-alone":[81],"Python":[82],"program":[83],"contribute":[86],"analysis.":[93]},"counts_by_year":[{"year":2026,"cited_by_count":48},{"year":2025,"cited_by_count":274},{"year":2024,"cited_by_count":503},{"year":2023,"cited_by_count":422},{"year":2022,"cited_by_count":585},{"year":2021,"cited_by_count":663},{"year":2020,"cited_by_count":539},{"year":2019,"cited_by_count":333},{"year":2018,"cited_by_count":242},{"year":2017,"cited_by_count":185},{"year":2016,"cited_by_count":84},{"year":2015,"cited_by_count":62},{"year":2014,"cited_by_count":33},{"year":2013,"cited_by_count":22},{"year":2012,"cited_by_count":20}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
