{"id":"https://openalex.org/W2143763906","doi":"https://doi.org/10.1093/bioinformatics/bti384","title":"Fold recognition by combining profile-profile alignment and support vector machine","display_name":"Fold recognition by combining profile-profile alignment and support vector machine","publication_year":2005,"publication_date":"2005-03-15","ids":{"openalex":"https://openalex.org/W2143763906","doi":"https://doi.org/10.1093/bioinformatics/bti384","mag":"2143763906","pmid":"https://pubmed.ncbi.nlm.nih.gov/15769835"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti384","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti384","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/11/2667/48971372/bioinformatics_21_11_2667.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/11/2667/48971372/bioinformatics_21_11_2667.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036123643","display_name":"Sangsoo Han","orcid":"https://orcid.org/0000-0002-4767-8076"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"S. Han","raw_affiliation_strings":["Department of Biosystems, Korea Advanced Institute of Science and Technology, Daejeon, 305-701, Korea","The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems, Korea Advanced Institute of Science and Technology, Daejeon, 305-701, Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101714142","display_name":"Byung\u2010Chul Lee","orcid":"https://orcid.org/0009-0005-6638-6684"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"B.-c. Lee","raw_affiliation_strings":["Department of Biosystems, Korea Advanced Institute of Science and Technology  Daejeon, 305-701, Korea","The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems, Korea Advanced Institute of Science and Technology  Daejeon, 305-701, Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100693952","display_name":"Shuhui Yu","orcid":"https://orcid.org/0000-0003-0219-6564"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"S. T. Yu","raw_affiliation_strings":["Department of Biosystems, Korea Advanced Institute of Science and Technology  Daejeon, 305-701, Korea","Department of BioSystems, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems, Korea Advanced Institute of Science and Technology  Daejeon, 305-701, Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"Department of BioSystems, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110684400","display_name":"Chan-Seok Jeong","orcid":null},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"C.-s. Jeong","raw_affiliation_strings":["Department of Biosystems, Korea Advanced Institute of Science and Technology  Daejeon, 305-701, Korea","Department of BioSystems, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems, Korea Advanced Institute of Science and Technology  Daejeon, 305-701, Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"Department of BioSystems, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055269456","display_name":"Suwon Lee","orcid":"https://orcid.org/0000-0002-6573-6348"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"S. Lee","raw_affiliation_strings":["Department of Biosystems, Korea Advanced Institute of Science and Technology  Daejeon, 305-701, Korea","Department of BioSystems, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems, Korea Advanced Institute of Science and Technology  Daejeon, 305-701, Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"Department of BioSystems, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100652838","display_name":"Doyeon Kim","orcid":"https://orcid.org/0000-0003-3717-7275"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"D. Kim","raw_affiliation_strings":["Department of Biosystems, Korea Advanced Institute of Science and Technology  Daejeon, 305-701, Korea","Department of BioSystems, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems, Korea Advanced Institute of Science and Technology  Daejeon, 305-701, Korea","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"Department of BioSystems, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea","institution_ids":["https://openalex.org/I157485424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5036123643"],"corresponding_institution_ids":["https://openalex.org/I157485424"],"apc_list":null,"apc_paid":null,"fwci":2.1522,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.87053722,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"21","issue":"11","first_page":"2667","last_page":"2673"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.852792501449585},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.6833111047744751},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5733126401901245},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5169850587844849},{"id":"https://openalex.org/keywords/feature-vector","display_name":"Feature vector","score":0.5056300163269043},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.46646109223365784},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34084293246269226}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.852792501449585},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.6833111047744751},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5733126401901245},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5169850587844849},{"id":"https://openalex.org/C83665646","wikidata":"https://www.wikidata.org/wiki/Q42139305","display_name":"Feature vector","level":2,"score":0.5056300163269043},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.46646109223365784},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34084293246269226},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bti384","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti384","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/11/2667/48971372/bioinformatics_21_11_2667.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15769835","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15769835","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.105.5312","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.105.5312","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/cgi/reprint/bti384v1.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti384","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti384","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/11/2667/48971372/bioinformatics_21_11_2667.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2143763906.pdf","grobid_xml":"https://content.openalex.org/works/W2143763906.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1549656520","https://openalex.org/W1604726175","https://openalex.org/W1618905105","https://openalex.org/W1973714307","https://openalex.org/W1979389134","https://openalex.org/W1993826818","https://openalex.org/W1996159969","https://openalex.org/W2004228538","https://openalex.org/W2011495938","https://openalex.org/W2037960865","https://openalex.org/W2044228129","https://openalex.org/W2062693912","https://openalex.org/W2080336769","https://openalex.org/W2083445888","https://openalex.org/W2084466582","https://openalex.org/W2084787613","https://openalex.org/W2085277871","https://openalex.org/W2091155169","https://openalex.org/W2094519647","https://openalex.org/W2098487344","https://openalex.org/W2099075703","https://openalex.org/W2101229087","https://openalex.org/W2105840826","https://openalex.org/W2107103206","https://openalex.org/W2112493377","https://openalex.org/W2122945697","https://openalex.org/W2124709175","https://openalex.org/W2128328428","https://openalex.org/W2131291226","https://openalex.org/W2133075481","https://openalex.org/W2133657429","https://openalex.org/W2139270371","https://openalex.org/W2140215200","https://openalex.org/W2144483796","https://openalex.org/W2144686793","https://openalex.org/W2147667050","https://openalex.org/W2148603752","https://openalex.org/W2151430326","https://openalex.org/W2158714788","https://openalex.org/W2160672912","https://openalex.org/W2164864731","https://openalex.org/W2169097687","https://openalex.org/W2283504545","https://openalex.org/W4246356731","https://openalex.org/W4256395558"],"related_works":["https://openalex.org/W2345184372","https://openalex.org/W3013515612","https://openalex.org/W2136184105","https://openalex.org/W2041399278","https://openalex.org/W2336974148","https://openalex.org/W2056016498","https://openalex.org/W2389470892","https://openalex.org/W4293087713","https://openalex.org/W2187500075","https://openalex.org/W2378448154"],"abstract_inverted_index":{"MOTIVATION:":[0],"Currently,":[1],"the":[2,14,37,45,52,68,71,86,184,204,207,215],"most":[3],"accurate":[4],"fold-recognition":[5],"method":[6,65,136,167,189],"is":[7,28,89,101,113,123],"to":[8,66,115,125],"perform":[9],"profile-profile":[10,144],"alignments":[11,19],"and":[12,79,143,151,156],"estimate":[13,67],"statistical":[15],"significances":[16],"of":[17,70,82,95,158,170,193,218],"those":[18],"by":[20,104],"calculating":[21],"Z-score":[22,147,152],"or":[23,54],"E-value.":[24],"Although":[25],"this":[26,59],"scheme":[27,153],"reliable":[29],"in":[30,43,85,174,179],"recognizing":[31],"relatively":[32],"close":[33],"homologs":[34,47],"related":[35,50,124,195],"at":[36,51,162,183,197,214],"family":[38],"level,":[39,186],"it":[40],"has":[41],"difficulty":[42],"finding":[44],"remote":[46],"that":[48,119,133,206],"are":[49],"superfamily":[53],"fold":[55,87,185],"level.":[56],"RESULTS:":[57],"In":[58],"paper,":[60],"we":[61],"present":[62],"an":[63],"alternative":[64],"significance":[69],"alignments.":[72],"The":[73,109],"alignment":[74,145],"between":[75],"a":[76,80,92,116,120,126,134,165,187,200],"query":[77,121],"protein":[78],"template":[81],"length":[83,96],"n":[84,97],"library":[88],"transformed":[90],"into":[91],"feature":[93],"vector":[94,106],"+":[98],"1,":[99],"which":[100],"then":[102],"evaluated":[103],"support":[105],"machine":[107],"(SVM).":[108],"output":[110],"from":[111],"SVM":[112,129],"converted":[114],"posterior":[117],"probability":[118],"sequence":[122],"template,":[127],"given":[128],"output.":[130],"Results":[131],"show":[132],"new":[135,166,188],"shows":[137],"significantly":[138],"better":[139],"performance":[140],"than":[141,176],"PSI-BLAST":[142,150],"with":[146],"scheme.":[148],"While":[149],"detect":[154,191,211],"16":[155],"20%":[157],"superfamily-related":[159],"proteins,":[160,172],"respectively,":[161],"90%":[163,198],"specificity,":[164,199],"detects":[168],"46%":[169],"these":[171],"resulting":[173],"more":[175],"2-fold":[177],"increase":[178],"sensitivity.":[180],"More":[181],"significantly,":[182],"can":[190,210],"14%":[192],"remotely":[194],"proteins":[196],"remarkable":[201],"result":[202],"considering":[203],"fact":[205],"other":[208],"methods":[209],"almost":[212],"none":[213],"same":[216],"level":[217],"specificity.":[219]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
