{"id":"https://openalex.org/W2140798893","doi":"https://doi.org/10.1093/bioinformatics/bti366","title":"PSIbase: a database of Protein Structural Interactome map (PSIMAP)","display_name":"PSIbase: a database of Protein Structural Interactome map (PSIMAP)","publication_year":2005,"publication_date":"2005-03-03","ids":{"openalex":"https://openalex.org/W2140798893","doi":"https://doi.org/10.1093/bioinformatics/bti366","mag":"2140798893","pmid":"https://pubmed.ncbi.nlm.nih.gov/15749693"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti366","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti366","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/10/2541/545866/bti366.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/10/2541/545866/bti366.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057332623","display_name":"Sungsam Gong","orcid":"https://orcid.org/0000-0001-5796-4423"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"S. Gong","raw_affiliation_strings":["Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033619263","display_name":"Giwan Yoon","orcid":"https://orcid.org/0000-0002-3773-8039"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"G. Yoon","raw_affiliation_strings":["OITEK, Daejeon, Korea,","OITEK Daejeon, Korea#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"OITEK, Daejeon, Korea,","institution_ids":[]},{"raw_affiliation_string":"OITEK Daejeon, Korea#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036283039","display_name":"In Sock Jang","orcid":"https://orcid.org/0000-0002-7285-7885"},"institutions":[{"id":"https://openalex.org/I196733613","display_name":"Korea Gas Corporation (South Korea)","ror":"https://ror.org/0058p8h34","country_code":"KR","type":"company","lineage":["https://openalex.org/I196733613"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"I. Jang","raw_affiliation_strings":["NGIC, KRIBB, Daejeon, Korea,","NGIC, KRIBB Daejeon, Korea#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NGIC, KRIBB, Daejeon, Korea,","institution_ids":["https://openalex.org/I196733613","https://openalex.org/I73616290"]},{"raw_affiliation_string":"NGIC, KRIBB Daejeon, Korea#TAB#","institution_ids":["https://openalex.org/I196733613","https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005347238","display_name":"Dan Bolser","orcid":"https://orcid.org/0000-0002-3991-0859"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"D. Bolser","raw_affiliation_strings":["MRC-DUNN, Cambridge, UK,","MRC-DUNN Cambridge, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC-DUNN, Cambridge, UK,","institution_ids":[]},{"raw_affiliation_string":"MRC-DUNN Cambridge, UK#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010889880","display_name":"P. Dafas","orcid":null},"institutions":[{"id":"https://openalex.org/I180825142","display_name":"City, University of London","ror":"https://ror.org/04489at23","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I180825142"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"P. Dafas","raw_affiliation_strings":["City University, London, UK,","City University London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"City University, London, UK,","institution_ids":["https://openalex.org/I180825142"]},{"raw_affiliation_string":"City University London, UK","institution_ids":["https://openalex.org/I180825142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016411406","display_name":"Michael Schroeder","orcid":"https://orcid.org/0000-0003-2848-6949"},"institutions":[{"id":"https://openalex.org/I4405272450","display_name":"Biotechnologisches Zentrum","ror":"https://ror.org/046b28292","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M. Schroeder","raw_affiliation_strings":["Biotechnologisches Zentrum, TU Dresden, Germany,","Biotechnologisches, Zentrum, TU Dresden, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnologisches Zentrum, TU Dresden, Germany,","institution_ids":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]},{"raw_affiliation_string":"Biotechnologisches, Zentrum, TU Dresden, Germany#TAB#","institution_ids":["https://openalex.org/I4405272450","https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015094039","display_name":"Ho\u2010Jin Choi","orcid":"https://orcid.org/0000-0002-3398-9543"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"H. Choi","raw_affiliation_strings":["Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea,","Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea,","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023198692","display_name":"Y. Cho","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Y. Cho","raw_affiliation_strings":["OITEK, Daejeon, Korea,","OITEK Daejeon, Korea#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"OITEK, Daejeon, Korea,","institution_ids":[]},{"raw_affiliation_string":"OITEK Daejeon, Korea#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101725109","display_name":"Kyungdo Han","orcid":"https://orcid.org/0000-0002-9622-0643"},"institutions":[{"id":"https://openalex.org/I191879574","display_name":"Inha University","ror":"https://ror.org/01easw929","country_code":"KR","type":"education","lineage":["https://openalex.org/I191879574"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"K. Han","raw_affiliation_strings":["Inha University, Incheon, Korea,","Inha University Incheon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inha University, Incheon, Korea,","institution_ids":["https://openalex.org/I191879574"]},{"raw_affiliation_string":"Inha University Incheon, Korea","institution_ids":["https://openalex.org/I191879574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100741445","display_name":"Sunghoon Lee","orcid":"https://orcid.org/0000-0002-8916-2035"},"institutions":[{"id":"https://openalex.org/I196733613","display_name":"Korea Gas Corporation (South Korea)","ror":"https://ror.org/0058p8h34","country_code":"KR","type":"company","lineage":["https://openalex.org/I196733613"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"S. Lee","raw_affiliation_strings":["NGIC, KRIBB, Daejeon, Korea,","NGIC, KRIBB Daejeon, Korea#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NGIC, KRIBB, Daejeon, Korea,","institution_ids":["https://openalex.org/I196733613","https://openalex.org/I73616290"]},{"raw_affiliation_string":"NGIC, KRIBB Daejeon, Korea#TAB#","institution_ids":["https://openalex.org/I196733613","https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015094039","display_name":"Ho\u2010Jin Choi","orcid":"https://orcid.org/0000-0002-3398-9543"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"H. Choi","raw_affiliation_strings":["Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea,","Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea,","institution_ids":["https://openalex.org/I157485424"]},{"raw_affiliation_string":"Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067224781","display_name":"Michael Lapp\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M. Lappe","raw_affiliation_strings":["Max Planck Institute for Molecular Genetics, Berlin, Germany,","Max Planck Institute  for Molecular Genetics, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Molecular Genetics, Berlin, Germany,","institution_ids":["https://openalex.org/I4210142260"]},{"raw_affiliation_string":"Max Planck Institute  for Molecular Genetics, Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064498279","display_name":"Liisa Holm","orcid":"https://orcid.org/0000-0002-7807-2966"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L. Holm","raw_affiliation_strings":["Helsinki University, Finland and","Helsinki University, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Helsinki University, Finland and","institution_ids":[]},{"raw_affiliation_string":"Helsinki University, Finland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047859685","display_name":"Sanguk Kim","orcid":"https://orcid.org/0000-0002-3449-3814"},"institutions":[{"id":"https://openalex.org/I196733613","display_name":"Korea Gas Corporation (South Korea)","ror":"https://ror.org/0058p8h34","country_code":"KR","type":"company","lineage":["https://openalex.org/I196733613"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"S. Kim","raw_affiliation_strings":["NGIC, KRIBB, Daejeon, Korea,","NGIC, KRIBB Daejeon, Korea#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NGIC, KRIBB, Daejeon, Korea,","institution_ids":["https://openalex.org/I196733613","https://openalex.org/I73616290"]},{"raw_affiliation_string":"NGIC, KRIBB Daejeon, Korea#TAB#","institution_ids":["https://openalex.org/I196733613","https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110747441","display_name":"D. Oh","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"D. Oh","raw_affiliation_strings":["OITEK, Daejeon, Korea,","OITEK Daejeon, Korea#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"OITEK, Daejeon, Korea,","institution_ids":[]},{"raw_affiliation_string":"OITEK Daejeon, Korea#TAB#","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070693100","display_name":"Jong Bhak","orcid":"https://orcid.org/0000-0002-4228-1299"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"J. Bhak","raw_affiliation_strings":["Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea","institution_ids":["https://openalex.org/I157485424"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5057332623"],"corresponding_institution_ids":["https://openalex.org/I157485424"],"apc_list":null,"apc_paid":null,"fwci":3.3222,"has_fulltext":true,"cited_by_count":91,"citation_normalized_percentile":{"value":0.92855818,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"21","issue":"10","first_page":"2541","last_page":"2543"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6437000036239624,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6437000036239624,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.14219999313354492,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.0471000000834465,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.9464296102523804},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6861419081687927},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6158962845802307},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.5036315321922302},{"id":"https://openalex.org/keywords/euclidean-distance","display_name":"Euclidean distance","score":0.4906558096408844},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.48437508940696716},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4709621071815491},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41093355417251587},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37092119455337524},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36911696195602417},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36667656898498535},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3508908748626709},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3297191858291626},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17920613288879395},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16556882858276367},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.1517125964164734},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1322585642337799},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1261228322982788}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.9464296102523804},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6861419081687927},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6158962845802307},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.5036315321922302},{"id":"https://openalex.org/C120174047","wikidata":"https://www.wikidata.org/wiki/Q847073","display_name":"Euclidean distance","level":2,"score":0.4906558096408844},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.48437508940696716},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4709621071815491},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41093355417251587},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37092119455337524},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36911696195602417},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36667656898498535},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3508908748626709},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3297191858291626},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17920613288879395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16556882858276367},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.1517125964164734},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1322585642337799},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1261228322982788},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/bti366","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti366","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/10/2541/545866/bti366.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15749693","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15749693","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.mpg.de:item_1585631","is_oa":true,"landing_page_url":"https://hdl.handle.net/11858/00-001M-0000-0010-86BB-E","pdf_url":"http://hdl.handle.net/11858/00-001M-0000-0010-86BB-E","source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:edoc.mpg.de:264902","is_oa":false,"landing_page_url":"http://edoc.mpg.de/264902","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, v.21, 2541-2543 (2005)","raw_type":"Article"},{"id":"pmh:oai:http://repository.kribb.re.kr:8080/:201005/6969","is_oa":false,"landing_page_url":"http://doi.org/10.1093/bioinformatics/bti366","pdf_url":null,"source":{"id":"https://openalex.org/S4406922719","display_name":"KRIBB Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"/dspace/upload/original/5871.pdf","raw_type":"Article"},{"id":"pmh:oai:scholarworks.unist.ac.kr:201301/13203","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/content/21/10/2541","pdf_url":null,"source":{"id":"https://openalex.org/S4306401118","display_name":"Scholarworks@UNIST (Ulsan National Institute of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I48566637","host_organization_name":"Ulsan National Institute of Science and Technology","host_organization_lineage":["https://openalex.org/I48566637"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"ARTICLE"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti366","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti366","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/10/2541/545866/bti366.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322110","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07"},{"id":"https://openalex.org/F4320324161","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140798893.pdf","grobid_xml":"https://content.openalex.org/works/W2140798893.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1982428412","https://openalex.org/W2026199611","https://openalex.org/W2039063819","https://openalex.org/W2065304353","https://openalex.org/W2083978969","https://openalex.org/W2085277871","https://openalex.org/W2103657187","https://openalex.org/W2104315543","https://openalex.org/W2115217121","https://openalex.org/W2123280311","https://openalex.org/W2124973646","https://openalex.org/W2130687290","https://openalex.org/W2144231753","https://openalex.org/W2148834305","https://openalex.org/W4256395558"],"related_works":["https://openalex.org/W2152546257","https://openalex.org/W1500663296","https://openalex.org/W2018720220","https://openalex.org/W4252442860","https://openalex.org/W3159731292","https://openalex.org/W2178844921","https://openalex.org/W2162117109","https://openalex.org/W2392586760","https://openalex.org/W2146442590","https://openalex.org/W2157795344"],"abstract_inverted_index":{"UNLABELLED:":[0],"Protein":[1,20],"Structural":[2],"Interactome":[3],"map":[4,10],"(PSIMAP)":[5],"is":[6,41,87],"a":[7,42,83],"global":[8],"interaction":[9,16,50,66,75],"that":[11],"describes":[12],"domain-domain":[13],"and":[14,44,68,95],"protein-protein":[15],"information":[17,51],"for":[18,47],"known":[19],"Data":[21],"Bank":[22],"structures.":[23],"It":[24],"calculates":[25],"the":[26,54],"Euclidean":[27],"distance":[28],"to":[29],"determine":[30],"interactions":[31],"between":[32],"possible":[33,74],"pairs":[34],"of":[35,77,80],"structural":[36,49],"domains":[37],"in":[38],"proteins.":[39],"PSIbase":[40,57],"database":[43],"file":[45],"server":[46],"protein":[48,62],"calculated":[52],"by":[53],"PSIMAP":[55],"algorithm.":[56],"also":[58],"provides":[59],"an":[60],"easy-to-use":[61],"domain":[63],"assignment":[64,86],"module,":[65],"navigation":[67],"visual":[69],"tools.":[70],"Users":[71],"can":[72],"retrieve":[73],"partners":[76],"their":[78,90],"proteins":[79],"interests":[81],"if":[82],"significant":[84],"homology":[85],"made":[88],"with":[89],"query":[91],"sequences.":[92],"AVAILABILITY:":[93],"http://psimap.org":[94],"http://psibase.kaist.ac.kr/":[96]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":10}],"updated_date":"2026-07-25T17:18:41.151588","created_date":"2025-10-10T00:00:00"}
