{"id":"https://openalex.org/W2142375368","doi":"https://doi.org/10.1093/bioinformatics/bti338","title":"MaSTerClass: a case-based reasoning system for the classification of biomedical terms","display_name":"MaSTerClass: a case-based reasoning system for the classification of biomedical terms","publication_year":2005,"publication_date":"2005-02-22","ids":{"openalex":"https://openalex.org/W2142375368","doi":"https://doi.org/10.1093/bioinformatics/bti338","mag":"2142375368","pmid":"https://pubmed.ncbi.nlm.nih.gov/15728115"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti338","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti338","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/11/2748/833371/bti338.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/11/2748/833371/bti338.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016345745","display_name":"\u202aIrena Spasi\u0107","orcid":"https://orcid.org/0000-0002-8132-3885"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"I. Spasic","raw_affiliation_strings":["School of Chemistry, The University of Manchester, Sackville Street, PO Box 88, Manchester M60 1QD, UK. i.spasic@manchester.ac.uk","School of Chemistry, The University of Manchester, Sackville Street, PO Box 88, Manchester M60 1QD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemistry, The University of Manchester, Sackville Street, PO Box 88, Manchester M60 1QD, UK. i.spasic@manchester.ac.uk","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Chemistry, The University of Manchester, Sackville Street, PO Box 88, Manchester M60 1QD, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[{"id":"https://openalex.org/I54459138","display_name":"University of Salford","ror":"https://ror.org/01tmqtf75","country_code":"GB","type":"education","lineage":["https://openalex.org/I54459138"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"S. Ananiadou","raw_affiliation_strings":["School of Computing, Science and Engineering, The University of Salford The Crescent, Salford M5 4WT, UK#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, Science and Engineering, The University of Salford The Crescent, Salford M5 4WT, UK#TAB#","institution_ids":["https://openalex.org/I54459138"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112016879","display_name":"J Tsujii","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"J. Tsujii","raw_affiliation_strings":["Faculty of Information Science and Technology, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Science and Technology, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan#TAB#","institution_ids":["https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016345745"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":null,"apc_paid":null,"fwci":1.1377,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.76622441,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"21","issue":"11","first_page":"2748","last_page":"2758"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9409000277519226,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9409000277519226,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12881","display_name":"linguistics and terminology studies","score":0.01080000028014183,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.006300000008195639,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6497843861579895},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5340396761894226},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4061982035636902}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6497843861579895},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5340396761894226},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4061982035636902}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013358","descriptor_name":"Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013358","descriptor_name":"Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013358","descriptor_name":"Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bti338","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti338","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/11/2748/833371/bti338.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15728115","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15728115","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:https://orca.cardiff.ac.uk:6225","is_oa":true,"landing_page_url":"https://orca.cardiff.ac.uk/id/eprint/6225/","pdf_url":"http://bioinformatics.oxfordjournals.org/content/21/11/2748.long","source":{"id":"https://openalex.org/S7407055383","display_name":"ORCA Online Research @Cardiff","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti338","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti338","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/11/2748/833371/bti338.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6700000166893005}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320309","display_name":"Joint Information Systems Committee","ror":"https://ror.org/01rv9gx86"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2142375368.pdf"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1487906362","https://openalex.org/W1500151553","https://openalex.org/W1546738280","https://openalex.org/W1573617985","https://openalex.org/W1592053870","https://openalex.org/W1601228921","https://openalex.org/W1967488025","https://openalex.org/W1970026646","https://openalex.org/W1988255574","https://openalex.org/W1991983805","https://openalex.org/W2001496424","https://openalex.org/W2008085355","https://openalex.org/W2009484861","https://openalex.org/W2020256769","https://openalex.org/W2031203571","https://openalex.org/W2044030465","https://openalex.org/W2081096437","https://openalex.org/W2082189729","https://openalex.org/W2093476618","https://openalex.org/W2093723065","https://openalex.org/W2096146054","https://openalex.org/W2109711517","https://openalex.org/W2122411895","https://openalex.org/W2124861498","https://openalex.org/W2134769633","https://openalex.org/W2141252530","https://openalex.org/W2145184030","https://openalex.org/W2147152072","https://openalex.org/W2153544354","https://openalex.org/W2162461580","https://openalex.org/W2171553064","https://openalex.org/W2234028104"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4313488044","https://openalex.org/W3209574120","https://openalex.org/W4312192474","https://openalex.org/W4210805261"],"abstract_inverted_index":{"Motivation:":[0],"The":[1,105,141,174],"sheer":[2],"volume":[3],"of":[4,59,69,125,152],"textually":[5],"described":[6,77],"biomedical":[7,34,153],"knowledge":[8],"exerts":[9],"the":[10,47,56,70,79,119,129,145,150],"need":[11,109],"for":[12,149,169],"natural":[13],"language":[14],"processing":[15],"(NLP)":[16],"applications":[17,44],"in":[18,51,118,132],"order":[19],"to":[20,26,97,110,115,183],"allow":[21],"flexible":[22],"and":[23,81,91,171,181,186],"efficient":[24],"access":[25],"relevant":[27],"information.":[28],"Specialized":[29],"semantic":[30,38,126,135],"networks":[31],"(such":[32],"as":[33,122],"ontologies,":[35],"terminologies":[36],"or":[37,67],"lexicons)":[39],"can":[40,94],"significantly":[41],"enhance":[42],"these":[43],"by":[45,87],"supplying":[46],"necessary":[48],"terminological":[49],"information":[50],"a":[52,123,134],"machine-readable":[53],"form.":[54],"With":[55],"explosive":[57],"growth":[58],"bio-literature,":[60],"new":[61,100,138],"terms":[62,101,107,117],"(representing":[63],"newly":[64],"identified":[65],"concepts":[66],"variations":[68],"existing":[71],"terms)":[72],"may":[73],"not":[74],"be":[75,84,95,111,184],"explicitly":[76],"within":[78],"network":[80,136],"hence":[82],"cannot":[83],"fully":[85],"exploited":[86],"NLP":[88],"applications.":[89],"Linguistic":[90],"statistical":[92],"clues":[93],"used":[96],"extract":[98],"many":[99],"from":[102],"free":[103],"text.":[104],"extracted":[106],"still":[108],"correctly":[112],"positioned":[113],"relative":[114],"other":[116],"network.":[120],"Classification":[121],"means":[124],"typing":[127],"represents":[128],"first":[130],"step":[131],"updating":[133],"with":[137],"terms.":[139,154],"Results:":[140],"MaSTerClass":[142,156],"system":[143],"implements":[144],"case-based":[146],"reasoning":[147],"methodology":[148],"classification":[151],"Availability:":[155],"is":[157,162],"available":[158],"at":[159,198],"http://www.cbr-masterclass.org.":[160],"It":[161],"distributed":[163],"under":[164],"an":[165],"open":[166],"source":[167],"licence":[168],"educational":[170],"research":[172],"purposes.":[173],"software":[175],"requires":[176],"Java,":[177],"JWDSP,":[178],"Ant,":[179],"MySQL":[180],"X-hive":[182],"installed":[185],"licences":[187],"obtained":[188],"separately":[189],"where":[190],"needed.":[191],"Contact:":[192],"[email":[193],"protected]":[194],"Supplementary":[195],"information:":[196],"Available":[197],"http://www.cbr-masterclass.org":[199]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
