{"id":"https://openalex.org/W2144208087","doi":"https://doi.org/10.1093/bioinformatics/bti312","title":"Estimating cancer survival and clinical outcome based on genetic tumor progression scores","display_name":"Estimating cancer survival and clinical outcome based on genetic tumor progression scores","publication_year":2005,"publication_date":"2005-02-10","ids":{"openalex":"https://openalex.org/W2144208087","doi":"https://doi.org/10.1093/bioinformatics/bti312","mag":"2144208087","pmid":"https://pubmed.ncbi.nlm.nih.gov/15705654"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti312","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti312","pdf_url":null,"source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075610512","display_name":"J\u00f6rg Rahnenf\u00fchrer","orcid":"https://orcid.org/0000-0002-8947-440X"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"J. Rahnenfuhrer","raw_affiliation_strings":["Max-Planck Institute for Informatics, Stuhlsatzenhausweg 85, D-66123 Saarbr\u00fccken, Germany. rahnenfj@mpi-sb.mpg.de","Max-Planck-Institute for Informatics Stuhlsatzenhausweg 85, D-66123 Saarbr\u00fccken, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck Institute for Informatics, Stuhlsatzenhausweg 85, D-66123 Saarbr\u00fccken, Germany. rahnenfj@mpi-sb.mpg.de","institution_ids":["https://openalex.org/I4210109712"]},{"raw_affiliation_string":"Max-Planck-Institute for Informatics Stuhlsatzenhausweg 85, D-66123 Saarbr\u00fccken, Germany#TAB#","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035497488","display_name":"Niko Beerenwinkel","orcid":"https://orcid.org/0000-0002-0573-6119"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"N. Beerenwinkel","raw_affiliation_strings":["Max-Planck-Institute for Informatics Stuhlsatzenhausweg 85, D-66123 Saarbr\u00fccken, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck-Institute for Informatics Stuhlsatzenhausweg 85, D-66123 Saarbr\u00fccken, Germany#TAB#","institution_ids":["https://openalex.org/I149899117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062139994","display_name":"Wolfgang A. Schulz","orcid":"https://orcid.org/0000-0002-2196-463X"},"institutions":[{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"W. A. Schulz","raw_affiliation_strings":["Department of Urology, Heinrich-Heine University  D-40225 D\u00fcsseldorf, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology, Heinrich-Heine University  D-40225 D\u00fcsseldorf, Germany","institution_ids":["https://openalex.org/I44260953"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010036887","display_name":"Christian Hartmann","orcid":"https://orcid.org/0009-0004-3700-3536"},"institutions":[{"id":"https://openalex.org/I192389796","display_name":"Humboldt State University","ror":"https://ror.org/02qt0xs84","country_code":"US","type":"education","lineage":["https://openalex.org/I192389796"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Hartmann","raw_affiliation_strings":["Department of Neuropathology, Charit\u00e9, Humboldt University D-13353 Berlin, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neuropathology, Charit\u00e9, Humboldt University D-13353 Berlin, Germany#TAB#","institution_ids":["https://openalex.org/I192389796"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052657395","display_name":"Andreas von Deimling","orcid":"https://orcid.org/0000-0002-5863-540X"},"institutions":[{"id":"https://openalex.org/I192389796","display_name":"Humboldt State University","ror":"https://ror.org/02qt0xs84","country_code":"US","type":"education","lineage":["https://openalex.org/I192389796"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. von Deimling","raw_affiliation_strings":["Department of Neuropathology, Charit\u00e9, Humboldt University D-13353 Berlin, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neuropathology, Charit\u00e9, Humboldt University D-13353 Berlin, Germany#TAB#","institution_ids":["https://openalex.org/I192389796"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044131715","display_name":"Bernd Wullich","orcid":"https://orcid.org/0000-0002-0665-6604"},"institutions":[{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"B. Wullich","raw_affiliation_strings":["Department of Urology and Pediatric Urology, University of the Saarland D-66421 Homburg/Saar, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urology and Pediatric Urology, University of the Saarland D-66421 Homburg/Saar, Germany#TAB#","institution_ids":["https://openalex.org/I91712215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023556977","display_name":"Thomas Lengauer","orcid":"https://orcid.org/0000-0003-3801-2640"},"institutions":[{"id":"https://openalex.org/I149899117","display_name":"Max Planck Society","ror":"https://ror.org/01hhn8329","country_code":"DE","type":"funder","lineage":["https://openalex.org/I149899117"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"T. Lengauer","raw_affiliation_strings":["Max-Planck-Institute for Informatics Stuhlsatzenhausweg 85, D-66123 Saarbr\u00fccken, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max-Planck-Institute for Informatics Stuhlsatzenhausweg 85, D-66123 Saarbr\u00fccken, Germany#TAB#","institution_ids":["https://openalex.org/I149899117"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5075610512"],"corresponding_institution_ids":["https://openalex.org/I149899117","https://openalex.org/I4210109712"],"apc_list":null,"apc_paid":null,"fwci":2.9786,"has_fulltext":false,"cited_by_count":57,"citation_normalized_percentile":{"value":0.92581579,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"21","issue":"10","first_page":"2438","last_page":"2446"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.4945000112056732,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.4945000112056732,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.08299999684095383,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.08240000158548355,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/outcome","display_name":"Outcome (game theory)","score":0.6342813968658447},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.49264436960220337},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.4917586147785187},{"id":"https://openalex.org/keywords/survival-analysis","display_name":"Survival analysis","score":0.4105681777000427},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.3901771903038025},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3760960102081299},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10272154211997986}],"concepts":[{"id":"https://openalex.org/C148220186","wikidata":"https://www.wikidata.org/wiki/Q7111912","display_name":"Outcome (game theory)","level":2,"score":0.6342813968658447},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.49264436960220337},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.4917586147785187},{"id":"https://openalex.org/C10515644","wikidata":"https://www.wikidata.org/wiki/Q543310","display_name":"Survival analysis","level":2,"score":0.4105681777000427},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.3901771903038025},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3760960102081299},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10272154211997986},{"id":"https://openalex.org/C144237770","wikidata":"https://www.wikidata.org/wiki/Q747534","display_name":"Mathematical economics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002869","descriptor_name":"Chromosome Aberrations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002869","descriptor_name":"Chromosome Aberrations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002869","descriptor_name":"Chromosome Aberrations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003936","descriptor_name":"Diagnosis, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003936","descriptor_name":"Diagnosis, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003936","descriptor_name":"Diagnosis, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D015996","descriptor_name":"Survival Rate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015996","descriptor_name":"Survival Rate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015996","descriptor_name":"Survival Rate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016016","descriptor_name":"Proportional Hazards Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016016","descriptor_name":"Proportional Hazards Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016016","descriptor_name":"Proportional Hazards Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016896","descriptor_name":"Treatment Outcome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016896","descriptor_name":"Treatment Outcome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016896","descriptor_name":"Treatment Outcome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018450","descriptor_name":"Disease Progression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018570","descriptor_name":"Risk Assessment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bti312","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti312","pdf_url":null,"source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15705654","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15705654","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:edoc.mpg.de:279053","is_oa":false,"landing_page_url":"http://edoc.mpg.de/279053","pdf_url":null,"source":{"id":"https://openalex.org/S4406922265","display_name":"Max Planck Institute for Plasma Physics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, v.21, 2438-2446 (2005)","raw_type":"Article"},{"id":"pmh:oai:pure.mpg.de:item_1328906","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-000F-266F-6","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.699999988079071,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1580788756","https://openalex.org/W1915587770","https://openalex.org/W1986705681","https://openalex.org/W2042536531","https://openalex.org/W2046698683","https://openalex.org/W2055408387","https://openalex.org/W2091723114","https://openalex.org/W2110065044","https://openalex.org/W2123576600","https://openalex.org/W2124442734","https://openalex.org/W2141055671","https://openalex.org/W2150638747","https://openalex.org/W2160842550","https://openalex.org/W2402312039","https://openalex.org/W2610167300","https://openalex.org/W3147894994","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2978999882","https://openalex.org/W2153369162","https://openalex.org/W1966504330","https://openalex.org/W1979139803","https://openalex.org/W2119369480","https://openalex.org/W3141031773","https://openalex.org/W1595686156","https://openalex.org/W2037631372","https://openalex.org/W2181392282","https://openalex.org/W2030889776"],"abstract_inverted_index":{"MOTIVATION:":[0],"In":[1],"cancer":[2,138,170,219],"research,":[3],"prediction":[4],"of":[5,45,57,69,73,92,102,121,132,156,168],"time":[6],"to":[7,50,152,160],"death":[8],"or":[9],"relapse":[10,164],"is":[11,24,33,125,180,209],"important":[12],"for":[13,66,99,127,136,185,204,212,224],"a":[14,46,96,111,122,194,201],"meaningful":[15],"tumor":[16,47,61],"classification":[17],"and":[18,29,135,159,189,221],"selecting":[19],"appropriate":[20],"therapies.":[21],"Survival":[22],"prognosis":[23],"typically":[25],"based":[26],"on":[27,52],"clinical":[28,187],"histological":[30],"parameters.":[31],"There":[32],"increasing":[34],"interest":[35],"in":[36,48],"identifying":[37],"genetic":[38,58,71,81,112,119],"markers":[39,188],"that":[40,116,175],"better":[41],"capture":[42],"the":[43,67,70,74,80,100,118,176,225,235],"status":[44,72,120],"order":[49],"improve":[51],"existing":[53],"predictions.":[54],"The":[55,217],"accumulation":[56],"alterations":[59],"during":[60],"progression":[62,113],"can":[63,191],"be":[64,192],"used":[65],"assessment":[68],"tumor.":[75,123],"For":[76],"modeling":[77],"dependences":[78],"between":[79],"events,":[82],"evolutionary":[83],"tree":[84,206],"models":[85,91,108,148,229],"have":[86],"been":[87],"applied.":[88],"RESULTS:":[89],"Mixture":[90],"oncogenetic":[93],"trees":[94],"provide":[95],"probabilistic":[97],"framework":[98],"estimation":[101],"typical":[103],"pathogenetic":[104],"routes.":[105],"From":[106],"these":[107],"we":[109],"derive":[110],"score":[114],"(GPS)":[115],"estimates":[117],"GPS":[124,179],"calculated":[126],"glioblastoma":[128,157],"patients":[129,139,158],"from":[130,140,234],"loss":[131],"heterozygosity":[133],"measurements":[134],"prostate":[137,169],"comparative":[141],"genomic":[142],"hybridization":[143],"measurements.":[144],"Cox":[145,228],"proportional":[146],"hazard":[147],"are":[149,230],"then":[150],"fitted":[151],"observed":[153],"survival":[154],"times":[155,161],"until":[162],"PSA":[163],"following":[165],"radical":[166],"prostatectomy":[167],"patients.":[171],"It":[172],"turns":[173],"out":[174],"genetically":[177],"defined":[178],"predictive":[181],"even":[182],"after":[183],"adjustment":[184],"classical":[186],"thus":[190],"considered":[193],"medically":[195],"relevant":[196],"prognostic":[197],"factor.":[198],"AVAILABILITY:":[199],"Mtreemix,":[200],"software":[202],"package":[203],"estimating":[205],"mixture":[207],"models,":[208],"freely":[210],"available":[211,231],"non-commercial":[213],"users":[214],"at":[215],"http://mtreemix.bioinf.mpi-sb.mpg.de.":[216],"raw":[218],"datasets":[220],"R":[222],"code":[223],"analysis":[226],"with":[227],"upon":[232],"request":[233],"corresponding":[236],"author.":[237]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":5}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
