{"id":"https://openalex.org/W2106678197","doi":"https://doi.org/10.1093/bioinformatics/bti310","title":"GMAP: a genomic mapping and alignment program for mRNA and EST sequences","display_name":"GMAP: a genomic mapping and alignment program for mRNA and EST sequences","publication_year":2005,"publication_date":"2005-02-22","ids":{"openalex":"https://openalex.org/W2106678197","doi":"https://doi.org/10.1093/bioinformatics/bti310","mag":"2106678197","pmid":"https://pubmed.ncbi.nlm.nih.gov/15728110"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/9/1859/1140761/bti310.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/9/1859/1140761/bti310.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013047993","display_name":"Ting\u2010Di Wu","orcid":"https://orcid.org/0000-0002-6398-0363"},"institutions":[{"id":"https://openalex.org/I183934855","display_name":"Genentech","ror":"https://ror.org/04gndp242","country_code":null,"type":"company","lineage":["https://openalex.org/I118019719","https://openalex.org/I129302853","https://openalex.org/I183934855"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"T. D. Wu","raw_affiliation_strings":["Department of Bioinformatics Genentech, Inc., South San Francisco, CA 94080, USA. twu@gene.com","Department of Bioinformatics, Genentech Inc.,#N#   South San Francisco, CA 94080, USA"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics Genentech, Inc., South San Francisco, CA 94080, USA. twu@gene.com","institution_ids":[]},{"raw_affiliation_string":"Department of Bioinformatics, Genentech Inc.,#N#   South San Francisco, CA 94080, USA","institution_ids":["https://openalex.org/I183934855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088376198","display_name":"C.K. Watanabe","orcid":"https://orcid.org/0009-0005-9366-933X"},"institutions":[{"id":"https://openalex.org/I183934855","display_name":"Genentech","ror":"https://ror.org/04gndp242","country_code":null,"type":"company","lineage":["https://openalex.org/I118019719","https://openalex.org/I129302853","https://openalex.org/I183934855"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. K. Watanabe","raw_affiliation_strings":["Department of Corporate Information Technology  Genentech, Inc., South San Francisco, CA 94080, USA"],"affiliations":[{"raw_affiliation_string":"Department of Corporate Information Technology  Genentech, Inc., South San Francisco, CA 94080, USA","institution_ids":["https://openalex.org/I183934855"]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5013047993"],"corresponding_institution_ids":["https://openalex.org/I183934855"],"apc_list":null,"apc_paid":null,"fwci":9.8737,"has_fulltext":false,"cited_by_count":2662,"citation_normalized_percentile":{"value":0.98882036,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"21","issue":"9","first_page":"1859","last_page":"1875"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.530138373374939},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5050325989723206},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.4741722345352173},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4677085280418396},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4667789041996002},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4527873396873474},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4226154088973999},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.41984933614730835},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4155004620552063},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.41009700298309326},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.352292537689209},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.178482323884964},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.12459570169448853}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.530138373374939},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5050325989723206},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.4741722345352173},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4677085280418396},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4667789041996002},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4527873396873474},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4226154088973999},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.41984933614730835},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4155004620552063},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.41009700298309326},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.352292537689209},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.178482323884964},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.12459570169448853},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bti310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/9/1859/1140761/bti310.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15728110","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15728110","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.134.1227","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.134.1227","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/cgi/reprint/21/9/1859.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.93.1886","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.93.1886","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.gene.com/share/gmap/paper/gmap.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti310","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti310","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/9/1859/1140761/bti310.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2106678197.pdf","grobid_xml":"https://content.openalex.org/works/W2106678197.grobid-xml"},"referenced_works_count":98,"referenced_works":["https://openalex.org/W100731401","https://openalex.org/W1008280890","https://openalex.org/W1482360569","https://openalex.org/W1482634320","https://openalex.org/W1494075612","https://openalex.org/W1501400124","https://openalex.org/W1557880001","https://openalex.org/W1602130591","https://openalex.org/W1749816123","https://openalex.org/W1753248846","https://openalex.org/W1956576553","https://openalex.org/W1964139840","https://openalex.org/W1964918240","https://openalex.org/W1965051773","https://openalex.org/W1966833356","https://openalex.org/W1977828801","https://openalex.org/W1986014242","https://openalex.org/W1988469584","https://openalex.org/W1989482194","https://openalex.org/W1991968395","https://openalex.org/W1994923410","https://openalex.org/W2001124269","https://openalex.org/W2007420854","https://openalex.org/W2008659594","https://openalex.org/W2018134201","https://openalex.org/W2019573310","https://openalex.org/W2022169621","https://openalex.org/W2033310094","https://openalex.org/W2033956223","https://openalex.org/W2036056816","https://openalex.org/W2039249321","https://openalex.org/W2040068950","https://openalex.org/W2045040686","https://openalex.org/W2046259882","https://openalex.org/W2052729310","https://openalex.org/W2055043387","https://openalex.org/W2055666215","https://openalex.org/W2074231493","https://openalex.org/W2077689651","https://openalex.org/W2087064593","https://openalex.org/W2088440342","https://openalex.org/W2090819723","https://openalex.org/W2095685450","https://openalex.org/W2096720270","https://openalex.org/W2105360191","https://openalex.org/W2107694985","https://openalex.org/W2108066473","https://openalex.org/W2108497208","https://openalex.org/W2108787198","https://openalex.org/W2110291136","https://openalex.org/W2112118427","https://openalex.org/W2112240593","https://openalex.org/W2112616522","https://openalex.org/W2112982447","https://openalex.org/W2114049512","https://openalex.org/W2114484738","https://openalex.org/W2116099104","https://openalex.org/W2116688916","https://openalex.org/W2118784262","https://openalex.org/W2121134982","https://openalex.org/W2123851326","https://openalex.org/W2126598626","https://openalex.org/W2128256249","https://openalex.org/W2128591967","https://openalex.org/W2132372375","https://openalex.org/W2134826720","https://openalex.org/W2135196291","https://openalex.org/W2136145671","https://openalex.org/W2137299447","https://openalex.org/W2137452575","https://openalex.org/W2137986897","https://openalex.org/W2138008048","https://openalex.org/W2141165178","https://openalex.org/W2141588844","https://openalex.org/W2142418779","https://openalex.org/W2142619120","https://openalex.org/W2143286856","https://openalex.org/W2144921226","https://openalex.org/W2147489306","https://openalex.org/W2148399816","https://openalex.org/W2149150750","https://openalex.org/W2149238618","https://openalex.org/W2151126719","https://openalex.org/W2151308110","https://openalex.org/W2151450179","https://openalex.org/W2152331922","https://openalex.org/W2155237411","https://openalex.org/W2155684118","https://openalex.org/W2158874082","https://openalex.org/W2159081651","https://openalex.org/W2160053034","https://openalex.org/W2161136120","https://openalex.org/W2163570826","https://openalex.org/W2166187656","https://openalex.org/W2166960413","https://openalex.org/W2168585454","https://openalex.org/W2169685494","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2943623134","https://openalex.org/W2494523064","https://openalex.org/W2086525401","https://openalex.org/W2215759665","https://openalex.org/W2960358116","https://openalex.org/W2030292806","https://openalex.org/W3041172967","https://openalex.org/W2749065928","https://openalex.org/W1969895229","https://openalex.org/W2108497208"],"abstract_inverted_index":{"http://www.gene.com/share/gmap.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":37},{"year":2025,"cited_by_count":144},{"year":2024,"cited_by_count":178},{"year":2023,"cited_by_count":188},{"year":2022,"cited_by_count":266},{"year":2021,"cited_by_count":371},{"year":2020,"cited_by_count":278},{"year":2019,"cited_by_count":220},{"year":2018,"cited_by_count":185},{"year":2017,"cited_by_count":172},{"year":2016,"cited_by_count":115},{"year":2015,"cited_by_count":98},{"year":2014,"cited_by_count":90},{"year":2013,"cited_by_count":66},{"year":2012,"cited_by_count":55}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}