{"id":"https://openalex.org/W2130675570","doi":"https://doi.org/10.1093/bioinformatics/bti277","title":"PIBASE: a comprehensive database of structurally defined protein interfaces","display_name":"PIBASE: a comprehensive database of structurally defined protein interfaces","publication_year":2005,"publication_date":"2005-01-18","ids":{"openalex":"https://openalex.org/W2130675570","doi":"https://doi.org/10.1093/bioinformatics/bti277","mag":"2130675570","pmid":"https://pubmed.ncbi.nlm.nih.gov/15657096"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti277","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti277","pdf_url":null,"source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007788805","display_name":"Fred P. Davis","orcid":"https://orcid.org/0000-0001-8294-1610"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"F. P. Davis","raw_affiliation_strings":["Graduate Group in Biophysics, California Institute for Quantitative Biomedical Research, University of California, San Francisco, 94143, USA","Graduate Group in Biophysics, California Institute for Quantitative Biomedical Research, University of California  San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Group in Biophysics, California Institute for Quantitative Biomedical Research, University of California, San Francisco, 94143, USA","institution_ids":[]},{"raw_affiliation_string":"Graduate Group in Biophysics, California Institute for Quantitative Biomedical Research, University of California  San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028845140","display_name":"Andrej S\u0103li","orcid":"https://orcid.org/0000-0003-0435-6197"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Sali","raw_affiliation_strings":["Department of Biopharmaceutical Sciences, California Institute for Quantitative Biomedical Research, University of California  San Francisco, CA 94143, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biopharmaceutical Sciences, California Institute for Quantitative Biomedical Research, University of California  San Francisco, CA 94143, USA","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5007788805"],"corresponding_institution_ids":["https://openalex.org/I180670191"],"apc_list":null,"apc_paid":null,"fwci":8.0878,"has_fulltext":false,"cited_by_count":166,"citation_normalized_percentile":{"value":0.98389821,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"21","issue":"9","first_page":"1901","last_page":"1907"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6859999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6859999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.09440000355243683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.05460000038146973,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.8945894241333008},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6552638411521912},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6341416239738464},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6107405424118042},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.6032835245132446},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5918052196502686},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.5310177206993103},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.5106833577156067},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.5097538828849792},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47521787881851196},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4715157747268677},{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.4573608636856079},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.4544357657432556},{"id":"https://openalex.org/keywords/structural-classification-of-proteins-database","display_name":"Structural Classification of Proteins database","score":0.448330283164978},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.42044249176979065},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.37824469804763794},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3750618100166321},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22208085656166077},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.1857546865940094},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18031421303749084},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14258164167404175},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11077752709388733},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09235769510269165},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08230862021446228}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.8945894241333008},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6552638411521912},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6341416239738464},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6107405424118042},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.6032835245132446},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5918052196502686},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.5310177206993103},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.5106833577156067},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.5097538828849792},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47521787881851196},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4715157747268677},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.4573608636856079},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.4544357657432556},{"id":"https://openalex.org/C58773245","wikidata":"https://www.wikidata.org/wiki/Q4832556","display_name":"Structural Classification of Proteins database","level":3,"score":0.448330283164978},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.42044249176979065},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.37824469804763794},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3750618100166321},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22208085656166077},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.1857546865940094},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18031421303749084},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14258164167404175},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11077752709388733},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09235769510269165},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08230862021446228},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bti277","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti277","pdf_url":null,"source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15657096","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15657096","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320333967","display_name":"Alcohol and Drug Abuse Institute, University of Washington","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1965266514","https://openalex.org/W1965907701","https://openalex.org/W1975440258","https://openalex.org/W1977186059","https://openalex.org/W1977845138","https://openalex.org/W2002924743","https://openalex.org/W2008708467","https://openalex.org/W2011845231","https://openalex.org/W2023455361","https://openalex.org/W2024668293","https://openalex.org/W2031768196","https://openalex.org/W2031772330","https://openalex.org/W2031903428","https://openalex.org/W2036730791","https://openalex.org/W2037036397","https://openalex.org/W2039063819","https://openalex.org/W2040765122","https://openalex.org/W2045197143","https://openalex.org/W2046407284","https://openalex.org/W2059473650","https://openalex.org/W2065283382","https://openalex.org/W2065304353","https://openalex.org/W2075770210","https://openalex.org/W2076710572","https://openalex.org/W2079988374","https://openalex.org/W2083978969","https://openalex.org/W2084619201","https://openalex.org/W2085277871","https://openalex.org/W2094090446","https://openalex.org/W2108067237","https://openalex.org/W2108862316","https://openalex.org/W2111397525","https://openalex.org/W2115043726","https://openalex.org/W2123280311","https://openalex.org/W2126016150","https://openalex.org/W2130479394","https://openalex.org/W2131736388","https://openalex.org/W2136525667","https://openalex.org/W2139074914","https://openalex.org/W2142209403","https://openalex.org/W2144231753","https://openalex.org/W2146279689","https://openalex.org/W2149906774","https://openalex.org/W2151792730","https://openalex.org/W2156575953","https://openalex.org/W2163312887","https://openalex.org/W2164391585","https://openalex.org/W2164586203","https://openalex.org/W2167869241","https://openalex.org/W4240921265","https://openalex.org/W4243883832","https://openalex.org/W4255855797","https://openalex.org/W4256395558"],"related_works":["https://openalex.org/W1979707045","https://openalex.org/W2113091268","https://openalex.org/W4285340733","https://openalex.org/W4235583582","https://openalex.org/W1973462822","https://openalex.org/W2041318800","https://openalex.org/W1940137454","https://openalex.org/W2126103104","https://openalex.org/W2137065132","https://openalex.org/W2009528611"],"abstract_inverted_index":{"MOTIVATION:":[0],"In":[1],"recent":[2],"years,":[3],"the":[4,15,18,26,55,58,67,115,167,176,191],"Protein":[5],"Data":[6],"Bank":[7],"(PDB)":[8],"has":[9],"experienced":[10],"rapid":[11],"growth.":[12],"To":[13],"maximize":[14],"utility":[16,174],"of":[17,36,42,48,70,95,114,145,169,175],"high":[19],"resolution":[20],"protein-protein":[21],"interaction":[22],"data":[23],"stored":[24],"in":[25,54,128],"PDB,":[27],"we":[28],"have":[29],"developed":[30],"PIBASE,":[31],"a":[32],"comprehensive":[33],"relational":[34],"database":[35,177,187],"structurally":[37],"defined":[38],"interfaces":[39,50,108,150],"between":[40,85],"pairs":[41,84],"protein":[43],"domains.":[44],"It":[45],"is":[46,178,188],"composed":[47],"binary":[49,149],"extracted":[51],"from":[52,66,88],"structures":[53],"PDB":[56,125],"and":[57,72,98,109,151,160],"Probable":[59],"Quaternary":[60],"Structure":[61],"server":[62],"using":[63],"domain":[64,83],"assignments":[65],"Structural":[68],"Classification":[69],"Proteins":[71],"CATH":[73],"fold":[74],"classification":[75],"systems.":[76],"RESULTS:":[77],"PIBASE":[78],"currently":[79],"contains":[80],"158,915":[81],"interacting":[82],"105,061":[86],"domains":[87],"2125":[89],"SCOP":[90],"families.":[91],"A":[92,112],"diverse":[93],"set":[94],"geometric,":[96],"physiochemical":[97],"topologic":[99],"properties":[100,117],"are":[101,118,135,156],"calculated":[102],"for":[103],"each":[104],"complex,":[105],"its":[106],"domains,":[107],"binding":[110,154],"sites.":[111],"subset":[113],"interface":[116,122],"used":[119],"to":[120],"remove":[121],"redundancy":[123],"within":[124],"entries,":[126],"resulting":[127],"20,912":[129],"distinct":[130],"domain-domain":[131,146],"interfaces.":[132],"The":[133,148,173,186],"complexes":[134],"grouped":[136],"into":[137,158],"989":[138],"topological":[139,162],"classes":[140],"based":[141,165],"on":[142,166],"their":[143,152],"patterns":[144],"contacts.":[147],"corresponding":[153],"sites":[155],"categorized":[157],"18,755":[159],"30,975":[161],"classes,":[163],"respectively,":[164],"topology":[168],"secondary":[170],"structure":[171],"elements.":[172],"illustrated":[179],"by":[180],"outlining":[181],"several":[182],"current":[183],"applications.":[184],"AVAILABILITY:":[185],"accessible":[189],"via":[190],"world":[192],"wide":[193],"web":[194],"at":[195],"http://salilab.org/pibase":[196],"SUPPLEMENTARY":[197],"INFORMATION:":[198],"http://salilab.org/pibase/suppinfo.html.":[199]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":16}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
