{"id":"https://openalex.org/W2123778222","doi":"https://doi.org/10.1093/bioinformatics/bti122","title":"MapLinker: a software tool that aids physical map-linked whole genome shotgun assembly","display_name":"MapLinker: a software tool that aids physical map-linked whole genome shotgun assembly","publication_year":2004,"publication_date":"2004-11-30","ids":{"openalex":"https://openalex.org/W2123778222","doi":"https://doi.org/10.1093/bioinformatics/bti122","mag":"2123778222","pmid":"https://pubmed.ncbi.nlm.nih.gov/15572475"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti122","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti122","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/1265/48967041/bioinformatics_21_7_1265.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/1265/48967041/bioinformatics_21_7_1265.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081633974","display_name":"Jian Xu","orcid":"https://orcid.org/0000-0002-0548-8477"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jian Xu","raw_affiliation_strings":["Center for Genome Sciences and Department of Molecular Biology and Pharmacology, Washington University School of Medicine St. Louis, MO 63108, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genome Sciences and Department of Molecular Biology and Pharmacology, Washington University School of Medicine St. Louis, MO 63108, USA","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063884903","display_name":"Jeffrey I. Gordon","orcid":"https://orcid.org/0000-0001-8304-3548"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey I. Gordon","raw_affiliation_strings":["Center for Genome Sciences and Department of Molecular Biology and Pharmacology, Washington University School of Medicine St. Louis, MO 63108, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genome Sciences and Department of Molecular Biology and Pharmacology, Washington University School of Medicine St. Louis, MO 63108, USA","institution_ids":["https://openalex.org/I204465549"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5081633974"],"corresponding_institution_ids":["https://openalex.org/I204465549"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.4526,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.60512341,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"21","issue":"7","first_page":"1265","last_page":"1266"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.6176596879959106},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5939147472381592},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5368881821632385},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.48487600684165955},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4648192524909973},{"id":"https://openalex.org/keywords/clone","display_name":"clone (Java method)","score":0.4447844922542572},{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.44439592957496643},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33474063873291016},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3321754038333893},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2558201551437378},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1418367624282837},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14045456051826477}],"concepts":[{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.6176596879959106},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5939147472381592},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5368881821632385},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.48487600684165955},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4648192524909973},{"id":"https://openalex.org/C81089528","wikidata":"https://www.wikidata.org/wiki/Q5134986","display_name":"clone (Java method)","level":3,"score":0.4447844922542572},{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.44439592957496643},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33474063873291016},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3321754038333893},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2558201551437378},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1418367624282837},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14045456051826477},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003001","descriptor_name":"Cloning, Molecular","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003001","descriptor_name":"Cloning, Molecular","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003001","descriptor_name":"Cloning, Molecular","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bti122","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti122","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/1265/48967041/bioinformatics_21_7_1265.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15572475","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15572475","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Evaluation Study"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti122","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti122","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/1265/48967041/bioinformatics_21_7_1265.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1844854713","display_name":null,"funder_award_id":"DK-30292","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2123778222.pdf"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2042045767","https://openalex.org/W2137667404","https://openalex.org/W2141217788","https://openalex.org/W2151464048","https://openalex.org/W2169885026","https://openalex.org/W2170488656","https://openalex.org/W2171453402"],"related_works":["https://openalex.org/W4210312276","https://openalex.org/W2417514914","https://openalex.org/W1641084016","https://openalex.org/W2018832993","https://openalex.org/W4255415692","https://openalex.org/W3128701120","https://openalex.org/W2733238538","https://openalex.org/W2741645994","https://openalex.org/W2994945316","https://openalex.org/W1841715584"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"MapLinker":[2,36,57],"is":[3,58],"an":[4],"analysis":[5],"tool,":[6],"as":[7,9],"well":[8],"a":[10,22,38],"browsing":[11],"interface,":[12],"that":[13,45],"facilitates":[14],"integration":[15],"of":[16,29,42],"whole":[17],"genome":[18,44],"sequence":[19,30,40],"assembly":[20],"with":[21],"clone-based":[23],"physical":[24,34],"map.":[25],"Using":[26],"the":[27,33,43,49],"locations":[28],"markers":[31],"on":[32],"map,":[35],"generates":[37],"tentative":[39],"map":[41,50],"serves":[46],"to":[47,52],"verify":[48],"and":[51],"guide":[53],"genome-wide":[54],"finishing.":[55],"Availability:":[56],"freely":[59],"available":[60],"at":[61],"http://gordonlab.wustl.edu/MapLinker":[62],"Contact:":[63],"jgordon@molecool.wustl.edu,":[64],"jxu@watson.wustl.edu":[65]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
