{"id":"https://openalex.org/W2123719666","doi":"https://doi.org/10.1093/bioinformatics/bti1036","title":"Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem","display_name":"Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem","publication_year":2005,"publication_date":"2005-06-01","ids":{"openalex":"https://openalex.org/W2123719666","doi":"https://doi.org/10.1093/bioinformatics/bti1036","mag":"2123719666","pmid":"https://pubmed.ncbi.nlm.nih.gov/15961462"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti1036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti1036","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/suppl_1/i232/526182/bti1036.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/suppl_1/i232/526182/bti1036.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010315204","display_name":"Henrik J\u00f6nsson","orcid":"https://orcid.org/0000-0003-2340-588X"},"institutions":[{"id":"https://openalex.org/I187531555","display_name":"Lund University","ror":"https://ror.org/012a77v79","country_code":"SE","type":"education","lineage":["https://openalex.org/I187531555"]},{"id":"https://openalex.org/I3019243323","display_name":"Center for Theoretical Physics","ror":"https://ror.org/04kfyt897","country_code":"PL","type":"facility","lineage":["https://openalex.org/I3019243323","https://openalex.org/I99542240"]}],"countries":["PL","SE"],"is_corresponding":true,"raw_author_name":"H. Jonsson","raw_affiliation_strings":["Department of Theoretical Physics, Complex Systems Division, Lund University Sweden","Department of Theoretical Physics, Complex Systems Division, Lund University Sweden#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Theoretical Physics, Complex Systems Division, Lund University Sweden","institution_ids":["https://openalex.org/I3019243323","https://openalex.org/I187531555"]},{"raw_affiliation_string":"Department of Theoretical Physics, Complex Systems Division, Lund University Sweden#TAB#","institution_ids":["https://openalex.org/I187531555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076899565","display_name":"Marcus G. Heisler","orcid":"https://orcid.org/0000-0001-5644-8398"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Heisler","raw_affiliation_strings":["Division of Biology and","Division of Biology, California Institute of Technology CA, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology and","institution_ids":[]},{"raw_affiliation_string":"Division of Biology, California Institute of Technology CA, USA#TAB#","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110215302","display_name":"G. V. Reddy","orcid":null},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. V. Reddy","raw_affiliation_strings":["Division of Biology and","Division of Biology, California Institute of Technology CA, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology and","institution_ids":[]},{"raw_affiliation_string":"Division of Biology, California Institute of Technology CA, USA#TAB#","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101464358","display_name":"V. K. Agrawal","orcid":"https://orcid.org/0009-0007-7380-0171"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"V. Agrawal","raw_affiliation_strings":["Division of Biology and","Division of Biology, California Institute of Technology CA, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology and","institution_ids":[]},{"raw_affiliation_string":"Division of Biology, California Institute of Technology CA, USA#TAB#","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052549312","display_name":"V. Gor","orcid":null},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]},{"id":"https://openalex.org/I1334627681","display_name":"Jet Propulsion Laboratory","ror":"https://ror.org/027k65916","country_code":"US","type":"facility","lineage":["https://openalex.org/I122411786","https://openalex.org/I1334627681","https://openalex.org/I4210124779"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"V. Gor","raw_affiliation_strings":["Jet Propulsion Laboratory, California Institute of Technology, CA, USA,and","Jet Propulsion Laboratory California Institute of Technology CA USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jet Propulsion Laboratory, California Institute of Technology, CA, USA,and","institution_ids":["https://openalex.org/I1334627681"]},{"raw_affiliation_string":"Jet Propulsion Laboratory California Institute of Technology CA USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034588960","display_name":"Bruce E. Shapiro","orcid":"https://orcid.org/0000-0003-3130-4659"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]},{"id":"https://openalex.org/I1334627681","display_name":"Jet Propulsion Laboratory","ror":"https://ror.org/027k65916","country_code":"US","type":"facility","lineage":["https://openalex.org/I122411786","https://openalex.org/I1334627681","https://openalex.org/I4210124779"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. E. Shapiro","raw_affiliation_strings":["Jet Propulsion Laboratory, California Institute of Technology, CA, USA,and","Jet Propulsion Laboratory California Institute of Technology CA USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jet Propulsion Laboratory, California Institute of Technology, CA, USA,and","institution_ids":["https://openalex.org/I1334627681"]},{"raw_affiliation_string":"Jet Propulsion Laboratory California Institute of Technology CA USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088981910","display_name":"Eric Mjolsness","orcid":"https://orcid.org/0000-0002-9085-9171"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]},{"id":"https://openalex.org/I4210116091","display_name":"Department of Physics, Mathematics and Informatics","ror":"https://ror.org/023sm4k53","country_code":"BY","type":"facility","lineage":["https://openalex.org/I151823869","https://openalex.org/I4210116091"]}],"countries":["BY","US"],"is_corresponding":false,"raw_author_name":"E. Mjolsness","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, University of California, Irvine, CA, USA","School of Information and Computer Science and","School of Information and Computer Science, University of California, Irvine, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, University of California, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]},{"raw_affiliation_string":"School of Information and Computer Science and","institution_ids":["https://openalex.org/I4210116091"]},{"raw_affiliation_string":"School of Information and Computer Science, University of California, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082944327","display_name":"Elliot M. Meyerowitz","orcid":"https://orcid.org/0000-0003-4798-5153"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. M. Meyerowitz","raw_affiliation_strings":["Division of Biology and","Division of Biology, California Institute of Technology CA, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biology and","institution_ids":[]},{"raw_affiliation_string":"Division of Biology, California Institute of Technology CA, USA#TAB#","institution_ids":["https://openalex.org/I122411786"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5010315204"],"corresponding_institution_ids":["https://openalex.org/I187531555","https://openalex.org/I3019243323"],"apc_list":null,"apc_paid":null,"fwci":11.1942,"has_fulltext":true,"cited_by_count":143,"citation_normalized_percentile":{"value":0.98304948,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"21","issue":"Suppl 1","first_page":"i232","last_page":"i240"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.8797000050544739,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.8797000050544739,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10869","display_name":"Polysaccharides and Plant Cell Walls","score":0.0215000007301569,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12729","display_name":"Tree Root and Stability Studies","score":0.019099999219179153,"subfield":{"id":"https://openalex.org/subfields/2210","display_name":"Mechanical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/meristem","display_name":"Meristem","score":0.7357006072998047},{"id":"https://openalex.org/keywords/homeobox","display_name":"Homeobox","score":0.6665309071540833},{"id":"https://openalex.org/keywords/downregulation-and-upregulation","display_name":"Downregulation and upregulation","score":0.5236496925354004},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.5047279596328735},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4712403416633606},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4442833960056305},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.43768948316574097},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2810934782028198},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24456679821014404},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.1959902048110962}],"concepts":[{"id":"https://openalex.org/C126021549","wikidata":"https://www.wikidata.org/wiki/Q207604","display_name":"Meristem","level":3,"score":0.7357006072998047},{"id":"https://openalex.org/C121587040","wikidata":"https://www.wikidata.org/wiki/Q898769","display_name":"Homeobox","level":4,"score":0.6665309071540833},{"id":"https://openalex.org/C127561419","wikidata":"https://www.wikidata.org/wiki/Q224527","display_name":"Downregulation and upregulation","level":3,"score":0.5236496925354004},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.5047279596328735},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4712403416633606},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4442833960056305},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.43768948316574097},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2810934782028198},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24456679821014404},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.1959902048110962}],"mesh":[{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015854","descriptor_name":"Up-Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015854","descriptor_name":"Up-Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015854","descriptor_name":"Up-Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017346","descriptor_name":"Protein Serine-Threonine Kinases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017346","descriptor_name":"Protein Serine-Threonine Kinases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017346","descriptor_name":"Protein Serine-Threonine Kinases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018398","descriptor_name":"Homeodomain Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D018398","descriptor_name":"Homeodomain Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D018398","descriptor_name":"Homeodomain Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018519","descriptor_name":"Meristem","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018519","descriptor_name":"Meristem","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018519","descriptor_name":"Meristem","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018613","descriptor_name":"Microscopy, Confocal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020794","descriptor_name":"Receptor Protein-Tyrosine Kinases","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D020794","descriptor_name":"Receptor Protein-Tyrosine Kinases","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D020794","descriptor_name":"Receptor Protein-Tyrosine Kinases","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D029681","descriptor_name":"Arabidopsis Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bti1036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti1036","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/suppl_1/i232/526182/bti1036.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15961462","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15961462","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:authors.library.caltech.edu:72532","is_oa":false,"landing_page_url":"https://authors.library.caltech.edu/72532/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:lup.lub.lu.se:88f49726-cdd4-4759-94c3-54d0542fbca2","is_oa":true,"landing_page_url":"https://lup.lub.lu.se/record/233606","pdf_url":null,"source":{"id":"https://openalex.org/S4306400536","display_name":"Lund University Publications (Lund University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I187531555","host_organization_name":"Lund University","host_organization_lineage":["https://openalex.org/I187531555"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti1036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti1036","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/suppl_1/i232/526182/bti1036.pdf","source":{"id":"https://openalex.org/S4210188263","display_name":"Computer applications in the biosciences","issn_l":"0266-7061","issn":["0266-7061","1460-2059"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.6200000047683716},{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.4099999964237213}],"awards":[{"id":"https://openalex.org/G8616606689","display_name":"FIBR: Developmental Modeling and Informatics","funder_award_id":"0330786","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320322327","display_name":"Knut och Alice Wallenbergs Stiftelse","ror":"https://ror.org/004hzzk67"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2123719666.pdf","grobid_xml":"https://content.openalex.org/works/W2123719666.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1576847343","https://openalex.org/W1598809600","https://openalex.org/W1623155147","https://openalex.org/W1837307608","https://openalex.org/W1852611204","https://openalex.org/W1963942260","https://openalex.org/W1967250093","https://openalex.org/W1980661496","https://openalex.org/W1989726653","https://openalex.org/W1991138583","https://openalex.org/W1999086372","https://openalex.org/W2005402824","https://openalex.org/W2036338631","https://openalex.org/W2037353000","https://openalex.org/W2040322522","https://openalex.org/W2070215364","https://openalex.org/W2081593807","https://openalex.org/W2091567597","https://openalex.org/W2135202770","https://openalex.org/W2145803225","https://openalex.org/W2151319306","https://openalex.org/W2159264658","https://openalex.org/W2161060432","https://openalex.org/W2432517183","https://openalex.org/W2981264952","https://openalex.org/W3022662444","https://openalex.org/W3097169496","https://openalex.org/W4256068510","https://openalex.org/W4312997542"],"related_works":["https://openalex.org/W3147805512","https://openalex.org/W1498812349","https://openalex.org/W1973890187","https://openalex.org/W2011699422","https://openalex.org/W4385352654","https://openalex.org/W2231927015","https://openalex.org/W2075907762","https://openalex.org/W2104159821","https://openalex.org/W4403162000","https://openalex.org/W2025045697"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1],"above-ground":[2],"tissues":[3],"of":[4,13,33,71,76,89,113,177,232,239,247],"higher":[5],"plants":[6],"are":[7,99,104,147,223],"generated":[8],"from":[9,237],"a":[10,39,125,149,186,273],"small":[11],"region":[12],"cells":[14],"situated":[15],"at":[16,258],"the":[17,21,31,34,43,49,69,81,87,108,121,175,178,202,208,211,220,229,233,240,248,277],"plant":[18],"apex":[19],"called":[20],"shoot":[22],"apical":[23],"meristem.":[24],"An":[25,244],"important":[26],"genetic":[27],"control":[28],"circuit":[29],"modulating":[30],"size":[32],"Arabidopsis":[35],"thaliana":[36],"meristem":[37],"is":[38,60,198],"feed-back":[40],"network":[41,98],"between":[42],"CLAVATA3":[44,72,77,241],"and":[45,63,101,111,130,163,225,251,264,270],"WUSCHEL":[46,58,179,194,203,221,234],"genes.":[47],"Although":[48],"expression":[50,115,143,161,180,204],"patterns":[51],"for":[52,68,96,128,166,174,272],"these":[53,114],"genes":[54],"do":[55],"not":[56],"overlap,":[57],"activity":[59],"both":[61],"necessary":[62],"sufficient":[64],"(when":[65],"expressed":[66],"ectopically)":[67],"induction":[70],"expression.":[73,195],"However,":[74],"upregulation":[75],"in":[78,86,152,189,215],"conjunction":[79],"with":[80,261],"receptor":[82],"kinase":[83],"CLAVATA1":[84],"results":[85,263],"downregulation":[88],"WUSCHEL.":[90],"Despite":[91],"much":[92],"work,":[93],"experimental":[94],"data":[95,162],"this":[97],"incomplete":[100],"additional":[102,262],"hypotheses":[103,138],"needed":[105],"to":[106,157,200,276],"explain":[107,140],"spatial":[109,230],"locations":[110],"dynamics":[112],"domains.":[116],"Predictive":[117],"mathematical":[118],"models":[119,172],"describing":[120],"system":[122],"should":[123],"provide":[124],"useful":[126],"tool":[127],"investigating":[129],"discriminating":[131],"among":[132],"possible":[133],"hypotheses,":[134],"by":[135],"determining":[136],"which":[137,190],"best":[139],"observed":[141],"gene":[142,160],"dynamics.":[144],"RESULTS:":[145],"We":[146,169],"developing":[148],"method":[150],"using":[151],"vivo":[153],"live":[154],"confocal":[155],"microscopy":[156],"capture":[158],"quantitative":[159],"create":[164],"templates":[165],"computational":[167],"models.":[168],"present":[170],"two":[171],"accounting":[173],"organization":[176],"domain.":[181,205],"Our":[182],"preferred":[183],"model":[184,197,209,249],"uses":[185],"reaction-diffusion":[187],"mechanism":[188],"an":[191],"activator":[192],"induces":[193],"This":[196],"able":[199],"organize":[201],"In":[206],"addition,":[207],"predicts":[210,228],"dynamical":[212],"reorganization":[213],"seen":[214],"experiments":[216],"where":[217],"cells,":[218],"including":[219],"domain,":[222],"ablated,":[224],"it":[226],"also":[227],"expansion":[231],"domain":[235],"resulting":[236],"removal":[238],"signal.":[242],"AVAILABILITY:":[243],"extended":[245],"description":[246],"framework":[250],"image":[252],"processing":[253],"algorithms":[254],"can":[255,280],"be":[256,281],"found":[257],"http://www.computableplant.org,":[259],"together":[260],"simulation":[265],"movies.":[266],"SUPPLEMENTARY":[267],"INFORMATION:":[268],"http://www.computableplant.org/":[269],"alternatively":[271],"direct":[274],"link":[275],"page,":[278],"http://computableplant.ics.uci.edu/bti1036":[279],"accessed.":[282]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":12}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
