{"id":"https://openalex.org/W2142508891","doi":"https://doi.org/10.1093/bioinformatics/bti100","title":"DPRml: distributed phylogeny reconstruction by maximum likelihood","display_name":"DPRml: distributed phylogeny reconstruction by maximum likelihood","publication_year":2004,"publication_date":"2004-10-28","ids":{"openalex":"https://openalex.org/W2142508891","doi":"https://doi.org/10.1093/bioinformatics/bti100","mag":"2142508891","pmid":"https://pubmed.ncbi.nlm.nih.gov/15513992"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti100","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti100","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/969/48967086/bioinformatics_21_7_969.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/969/48967086/bioinformatics_21_7_969.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057637553","display_name":"Thomas Keane","orcid":"https://orcid.org/0000-0001-7532-6898"},"institutions":[{"id":"https://openalex.org/I157286207","display_name":"National University of Ireland, Maynooth","ror":"https://ror.org/048nfjm95","country_code":"IE","type":"education","lineage":["https://openalex.org/I157286207"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"T. M. Keane","raw_affiliation_strings":["Department of Computer Science, National University of Ireland Maynooth, Ireland","Department of Computer Science, National University of Ireland, Maynooth, Ireland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National University of Ireland Maynooth, Ireland","institution_ids":["https://openalex.org/I157286207"]},{"raw_affiliation_string":"Department of Computer Science, National University of Ireland, Maynooth, Ireland","institution_ids":["https://openalex.org/I157286207"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065914106","display_name":"Thomas J. Naughton","orcid":"https://orcid.org/0000-0002-3546-2382"},"institutions":[{"id":"https://openalex.org/I157286207","display_name":"National University of Ireland, Maynooth","ror":"https://ror.org/048nfjm95","country_code":"IE","type":"education","lineage":["https://openalex.org/I157286207"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"T. J. Naughton","raw_affiliation_strings":["Department of Computer Science and","Department of Computer Science, National University of Ireland, Maynooth, Ireland"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, National University of Ireland, Maynooth, Ireland","institution_ids":["https://openalex.org/I157286207"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011012168","display_name":"Simon Travers","orcid":"https://orcid.org/0000-0003-0104-8260"},"institutions":[{"id":"https://openalex.org/I157286207","display_name":"National University of Ireland, Maynooth","ror":"https://ror.org/048nfjm95","country_code":"IE","type":"education","lineage":["https://openalex.org/I157286207"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"S. A. A. Travers","raw_affiliation_strings":["Department of Biology, National University of Ireland, Maynooth, Ireland","Department of Biology National University of Ireland Maynooth Ireland"],"affiliations":[{"raw_affiliation_string":"Department of Biology, National University of Ireland, Maynooth, Ireland","institution_ids":["https://openalex.org/I157286207"]},{"raw_affiliation_string":"Department of Biology National University of Ireland Maynooth Ireland","institution_ids":["https://openalex.org/I157286207"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037761875","display_name":"James O. McInerney","orcid":"https://orcid.org/0000-0003-1885-2503"},"institutions":[{"id":"https://openalex.org/I157286207","display_name":"National University of Ireland, Maynooth","ror":"https://ror.org/048nfjm95","country_code":"IE","type":"education","lineage":["https://openalex.org/I157286207"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"J. O. McInerney","raw_affiliation_strings":["Department of Biology, National University of Ireland, Maynooth, Ireland","Department of Biology National University of Ireland Maynooth Ireland"],"affiliations":[{"raw_affiliation_string":"Department of Biology, National University of Ireland, Maynooth, Ireland","institution_ids":["https://openalex.org/I157286207"]},{"raw_affiliation_string":"Department of Biology National University of Ireland Maynooth Ireland","institution_ids":["https://openalex.org/I157286207"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001600256","display_name":"Grace P. McCormack","orcid":"https://orcid.org/0000-0003-4960-5185"},"institutions":[{"id":"https://openalex.org/I157286207","display_name":"National University of Ireland, Maynooth","ror":"https://ror.org/048nfjm95","country_code":"IE","type":"education","lineage":["https://openalex.org/I157286207"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"G. P. McCormack","raw_affiliation_strings":["Department of Biology, National University of Ireland, Maynooth, Ireland","Department of Biology National University of Ireland Maynooth Ireland"],"affiliations":[{"raw_affiliation_string":"Department of Biology, National University of Ireland, Maynooth, Ireland","institution_ids":["https://openalex.org/I157286207"]},{"raw_affiliation_string":"Department of Biology National University of Ireland Maynooth Ireland","institution_ids":["https://openalex.org/I157286207"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5057637553"],"corresponding_institution_ids":["https://openalex.org/I157286207"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":11.6923,"has_fulltext":true,"cited_by_count":58,"citation_normalized_percentile":{"value":0.98480467,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"21","issue":"7","first_page":"969","last_page":"974"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9445000290870667,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.6617186069488525},{"id":"https://openalex.org/keywords/maximum-likelihood","display_name":"Maximum likelihood","score":0.6173418760299683},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5010700225830078},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33610183000564575},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25822749733924866},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.18631935119628906},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17856106162071228},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14009329676628113},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06418183445930481}],"concepts":[{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6617186069488525},{"id":"https://openalex.org/C49781872","wikidata":"https://www.wikidata.org/wiki/Q1045555","display_name":"Maximum likelihood","level":2,"score":0.6173418760299683},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5010700225830078},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33610183000564575},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25822749733924866},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.18631935119628906},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17856106162071228},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14009329676628113},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06418183445930481}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/bti100","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti100","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/969/48967086/bioinformatics_21_7_969.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15513992","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15513992","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/fc3e4513-307d-428b-84b1-194270988780","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/fc3e4513-307d-428b-84b1-194270988780","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Keane, T M, Naughton, T J, Travers, S A A, McInerney, J O & McCormack, G P 2005, 'DPRml : distributed phylogeny reconstruction by maximum likelihood', Bioinformatics (Oxford, England), vol. 21, no. 7, pp. 969-74. https://doi.org/10.1093/bioinformatics/bti100","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:eprints.maynoothuniversity.ie:569","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401432","display_name":"Maynooth University ePrints and eTheses Archive (Maynooth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157286207","host_organization_name":"National University of Ireland, Maynooth","host_organization_lineage":["https://openalex.org/I157286207"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.329.4775","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.329.4775","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2004/10/28/bioinformatics.bti100.full.pdf","raw_type":"text"},{"id":"pmh:oai:pure.atira.dk:publications/fc3e4513-307d-428b-84b1-194270988780","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/dprml(fc3e4513-307d-428b-84b1-194270988780).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Keane, T M, Naughton, T J, Travers, S A A, McInerney, J O & McCormack, G P 2005, 'DPRml : distributed phylogeny reconstruction by maximum likelihood', Bioinformatics (Oxford, England), vol. 21, no. 7, pp. 969-74. https://doi.org/10.1093/bioinformatics/bti100","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti100","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti100","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/7/969/48967086/bioinformatics_21_7_969.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320842","display_name":"Irish Research Council for Science, Engineering and Technology","ror":"https://ror.org/051xex213"},{"id":"https://openalex.org/F4320321056","display_name":"Irish Research Council","ror":"https://ror.org/051xex213"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142508891.pdf","grobid_xml":"https://content.openalex.org/works/W2142508891.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W181722852","https://openalex.org/W1502506658","https://openalex.org/W1504808146","https://openalex.org/W1549518189","https://openalex.org/W1561365779","https://openalex.org/W1673352269","https://openalex.org/W1796659043","https://openalex.org/W1867732144","https://openalex.org/W1971273325","https://openalex.org/W1990263013","https://openalex.org/W1993849326","https://openalex.org/W2000730583","https://openalex.org/W2009596137","https://openalex.org/W2029353650","https://openalex.org/W2062957956","https://openalex.org/W2064936870","https://openalex.org/W2082928585","https://openalex.org/W2102424972","https://openalex.org/W2102784966","https://openalex.org/W2103546861","https://openalex.org/W2105926960","https://openalex.org/W2124260482","https://openalex.org/W2126568132","https://openalex.org/W2134766004","https://openalex.org/W2141497252","https://openalex.org/W2142002702","https://openalex.org/W2150511069","https://openalex.org/W2150871235","https://openalex.org/W2166711652","https://openalex.org/W2167470150","https://openalex.org/W2170996473","https://openalex.org/W2172391442","https://openalex.org/W2395634509","https://openalex.org/W3199943451","https://openalex.org/W4238338831","https://openalex.org/W4251765949"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"We":[0,13,67],"have":[1,14,114],"identified":[2],"the":[3,57,69,76,93],"suitability":[4],"of":[5,56,61,78,97,109],"phylogenetic":[6,21,45,81],"analysis":[7,46],"to":[8,71,74],"large-scale":[9],"heterogeneous":[10],"distributed":[11,17,26,80,117],"computing.":[12],"completed":[15],"a":[16,43,79,121],"and":[18,42],"fully":[19],"cross-platform":[20],"tree":[22,39,82],"building":[23,40,83],"program":[24,84],"called":[25],"phylogeny":[27],"reconstruction":[28],"by":[29],"maximum":[30,37],"likelihood.":[31],"It":[32,53],"uses":[33],"an":[34,102],"already":[35],"proven":[36],"likelihood-based":[38],"algorithm":[41],"popular":[44],"library":[47],"for":[48],"all":[49],"its":[50],"likelihood":[51],"calculations.":[52],"offers":[54],"one":[55],"most":[58],"extensive":[59],"sets":[60],"DNA":[62],"substitution":[63],"models":[64],"currently":[65],"available.":[66],"are":[68],"first,":[70],"our":[72],"knowledge,":[73],"report":[75],"completion":[77],"that":[85],"can":[86,119],"achieve":[87],"near-linear":[88],"speedup":[89],"while":[90],"only":[91],"using":[92],"idle":[94,110],"clock":[95],"cycles":[96],"machines.":[98],"For":[99],"those":[100],"in":[101],"academic":[103],"or":[104],"corporate":[105],"environment":[106],"with":[107],"hundreds":[108],"desktop":[111],"machines,":[112],"we":[113],"shown":[115],"how":[116],"computing":[118],"deliver":[120],"'free'":[122],"ML":[123],"supercomputer.":[124]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
