{"id":"https://openalex.org/W2131245757","doi":"https://doi.org/10.1093/bioinformatics/bti037","title":"Online synonymous codon usage analyses with the ade4 and seqinR packages","display_name":"Online synonymous codon usage analyses with the ade4 and seqinR packages","publication_year":2004,"publication_date":"2004-09-16","ids":{"openalex":"https://openalex.org/W2131245757","doi":"https://doi.org/10.1093/bioinformatics/bti037","mag":"2131245757","pmid":"https://pubmed.ncbi.nlm.nih.gov/15374859"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bti037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti037","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/4/545/48965146/bioinformatics_21_4_545.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/21/4/545/48965146/bioinformatics_21_4_545.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006955680","display_name":"Delphine Charif","orcid":"https://orcid.org/0000-0002-1949-5969"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"D. Charif","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive\u2014CNRS UMR 5558, and INRIA Helix project, Universit\u00e9 Claude Bernard\u2014Lyon I 43 bd. du 11 Novembre 1918, F-69622 Villeurbanne cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive\u2014CNRS UMR 5558, and INRIA Helix project, Universit\u00e9 Claude Bernard\u2014Lyon I 43 bd. du 11 Novembre 1918, F-69622 Villeurbanne cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210135640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045834199","display_name":"Jean Thioulouse","orcid":"https://orcid.org/0000-0001-7664-0598"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J. Thioulouse","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive\u2014CNRS UMR 5558, and INRIA Helix project, Universit\u00e9 Claude Bernard\u2014Lyon I 43 bd. du 11 Novembre 1918, F-69622 Villeurbanne cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive\u2014CNRS UMR 5558, and INRIA Helix project, Universit\u00e9 Claude Bernard\u2014Lyon I 43 bd. du 11 Novembre 1918, F-69622 Villeurbanne cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210135640"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047274763","display_name":"Jean R. Lobry","orcid":"https://orcid.org/0000-0003-2632-804X"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J. R. Lobry","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive\u2014CNRS UMR 5558, and INRIA Helix project, Universit\u00e9 Claude Bernard\u2014Lyon I 43 bd. du 11 Novembre 1918, F-69622 Villeurbanne cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive\u2014CNRS UMR 5558, and INRIA Helix project, Universit\u00e9 Claude Bernard\u2014Lyon I 43 bd. du 11 Novembre 1918, F-69622 Villeurbanne cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210135640"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013133004","display_name":"Guy Perri\u00e8re","orcid":"https://orcid.org/0000-0002-6850-6265"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210135640","display_name":"Laboratoire de Biom\u00e9trie et Biologie Evolutive","ror":"https://ror.org/03skt0t88","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210104684","https://openalex.org/I4210107625","https://openalex.org/I4210135640"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"G. Perri\u00e8re","raw_affiliation_strings":["Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive\u2014CNRS UMR 5558, and INRIA Helix project, Universit\u00e9 Claude Bernard\u2014Lyon I 43 bd. du 11 Novembre 1918, F-69622 Villeurbanne cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive\u2014CNRS UMR 5558, and INRIA Helix project, Universit\u00e9 Claude Bernard\u2014Lyon I 43 bd. du 11 Novembre 1918, F-69622 Villeurbanne cedex, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210135640"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006955680"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210135640"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.6848,"has_fulltext":true,"cited_by_count":123,"citation_normalized_percentile":{"value":0.66800451,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"21","issue":"4","first_page":"545","last_page":"547"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9508000016212463,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9508000016212463,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.013899999670684338,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.003599999938160181,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/codon-usage-bias","display_name":"Codon usage bias","score":0.7422606348991394},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5283219218254089},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5029682517051697},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.49533405900001526},{"id":"https://openalex.org/keywords/web-site","display_name":"Web site","score":0.4772612750530243},{"id":"https://openalex.org/keywords/confounding","display_name":"Confounding","score":0.4529014527797699},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42987388372421265},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42031678557395935},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.37178659439086914},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34260934591293335},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2217247188091278},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19005167484283447},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.16158631443977356},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.14778363704681396},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08811420202255249},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08482661843299866}],"concepts":[{"id":"https://openalex.org/C87253356","wikidata":"https://www.wikidata.org/wiki/Q1106472","display_name":"Codon usage bias","level":4,"score":0.7422606348991394},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5283219218254089},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5029682517051697},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.49533405900001526},{"id":"https://openalex.org/C2984519610","wikidata":"https://www.wikidata.org/wiki/Q35127","display_name":"Web site","level":3,"score":0.4772612750530243},{"id":"https://openalex.org/C77350462","wikidata":"https://www.wikidata.org/wiki/Q1125472","display_name":"Confounding","level":2,"score":0.4529014527797699},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42987388372421265},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42031678557395935},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.37178659439086914},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34260934591293335},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2217247188091278},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19005167484283447},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.16158631443977356},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.14778363704681396},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08811420202255249},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08482661843299866}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bti037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti037","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/4/545/48965146/bioinformatics_21_4_545.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15374859","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15374859","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:HAL:hal-00427727v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00427727","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2005, 21, pp.545-547","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bti037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bti037","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/21/4/545/48965146/bioinformatics_21_4_545.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.550000011920929}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131245757.pdf","grobid_xml":"https://content.openalex.org/works/W2131245757.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1537484231","https://openalex.org/W1969761972","https://openalex.org/W2017026835","https://openalex.org/W2020812527","https://openalex.org/W2051043527","https://openalex.org/W2064341082","https://openalex.org/W2131254312"],"related_works":["https://openalex.org/W2994176440","https://openalex.org/W2481749367","https://openalex.org/W2510575233","https://openalex.org/W2495367848","https://openalex.org/W830718730","https://openalex.org/W2793477322","https://openalex.org/W4236720793","https://openalex.org/W1992228662","https://openalex.org/W2503931704","https://openalex.org/W4246786946"],"abstract_inverted_index":{"UNLABELLED:":[0],"Correspondence":[1],"analysis":[2],"of":[3,59,86],"codon":[4,34,81],"usage":[5,35,82],"data":[6,87],"is":[7,24,47,122],"a":[8,25,74,84,106,125],"widely":[9],"used":[10],"method":[11,61],"in":[12,18,89,114],"sequence":[13],"analysis,":[14],"but":[15],"the":[16,72,96,112,115],"variability":[17],"amino":[19],"acid":[20],"composition":[21],"between":[22],"proteins":[23],"confounding":[26],"factor":[27],"when":[28],"one":[29],"wants":[30],"to":[31,42,48,69,71,77,110],"analyse":[32],"synonymous":[33,80],"variability.":[36],"A":[37],"simple":[38],"and":[39],"natural":[40],"way":[41],"cope":[43],"with":[44,105],"this":[45,60],"problem":[46],"use":[49],"within-group":[50],"correspondence":[51],"analysis.":[52],"There":[53],"is,":[54],"however,":[55],"no":[56],"user-friendly":[57],"implementation":[58],"available":[62,88],"for":[63],"genomic":[64,91],"studies.":[65],"Our":[66],"motivation":[67],"was":[68],"provide":[70],"community":[73],"Web":[75,101],"facility":[76],"easily":[78],"study":[79],"on":[83],"subset":[85],"public":[90],"databases.":[92],"AVAILABILITY:":[93],"Availability":[94],"through":[95],"Pole":[97],"Bioinformatique":[98],"Lyonnais":[99],"(PBIL)":[100],"server":[102],"at":[103],"http://pbil.univ-lyon1.fr/datasets/charif04/":[104],"demo":[107],"allowing":[108],"us":[109],"reproduce":[111],"figure":[113],"present":[116],"application":[117],"note.":[118],"All":[119],"underlying":[120],"software":[121],"distributed":[123],"under":[124],"GPL":[126],"licence.":[127],"CONTACT:":[128],"http://pbil.univ-lyon1.fr/members/lobry.":[129]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":6}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
