{"id":"https://openalex.org/W2131850891","doi":"https://doi.org/10.1093/bioinformatics/bth939","title":"Assigning transmembrane segments to helices in intermediate-resolution structures","display_name":"Assigning transmembrane segments to helices in intermediate-resolution structures","publication_year":2004,"publication_date":"2004-07-19","ids":{"openalex":"https://openalex.org/W2131850891","doi":"https://doi.org/10.1093/bioinformatics/bth939","mag":"2131850891","pmid":"https://pubmed.ncbi.nlm.nih.gov/15262790"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth939","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth939","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025089277","display_name":"Angela Enosh","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Angela Enosh","raw_affiliation_strings":["School of Computer Science, Tel Aviv University, Ramat Aviv, Israel. angela@post.tau.ac.il","Department of Biochemistry, Tel-Aviv University, Ramat-Aviv 69978 Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Tel Aviv University, Ramat Aviv, Israel. angela@post.tau.ac.il","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Department of Biochemistry, Tel-Aviv University, Ramat-Aviv 69978 Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031768744","display_name":"Sarel J. Fleishman","orcid":"https://orcid.org/0000-0003-3177-7560"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Sarel J. Fleishman","raw_affiliation_strings":["Department of Biochemistry, Tel-Aviv University, Ramat-Aviv 69978 Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Tel-Aviv University, Ramat-Aviv 69978 Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037671858","display_name":"Nir Ben\u2010Tal","orcid":"https://orcid.org/0000-0001-6901-832X"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Nir Ben-Tal","raw_affiliation_strings":["Department of Biochemistry, Tel-Aviv University, Ramat-Aviv 69978 Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Tel-Aviv University, Ramat-Aviv 69978 Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038503253","display_name":"Dan Halperin","orcid":"https://orcid.org/0000-0002-3345-3765"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dan Halperin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5025089277"],"corresponding_institution_ids":["https://openalex.org/I16391192"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0853,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.75404848,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"20","issue":"suppl_1","first_page":"i122","last_page":"i129"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10407","display_name":"Lipid Membrane Structure and Behavior","score":0.2597000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10407","display_name":"Lipid Membrane Structure and Behavior","score":0.2597000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.24740000069141388,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.14910000562667847,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lactose-permease","display_name":"Lactose permease","score":0.9124480485916138},{"id":"https://openalex.org/keywords/bacteriorhodopsin","display_name":"Bacteriorhodopsin","score":0.7561393976211548},{"id":"https://openalex.org/keywords/transmembrane-domain","display_name":"Transmembrane domain","score":0.5879206657409668},{"id":"https://openalex.org/keywords/helix","display_name":"Helix (gastropod)","score":0.5714440941810608},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.5514546036720276},{"id":"https://openalex.org/keywords/transmembrane-protein","display_name":"Transmembrane protein","score":0.5360363721847534},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.5054690837860107},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.49646860361099243},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4884442389011383},{"id":"https://openalex.org/keywords/membrane-protein","display_name":"Membrane protein","score":0.43678534030914307},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3882109522819519},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3524383306503296},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3261517584323883},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.2618896961212158},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22441846132278442},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17347657680511475},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.16720128059387207},{"id":"https://openalex.org/keywords/membrane-transport-protein","display_name":"Membrane transport protein","score":0.14561641216278076},{"id":"https://openalex.org/keywords/membrane","display_name":"Membrane","score":0.12949538230895996}],"concepts":[{"id":"https://openalex.org/C58598135","wikidata":"https://www.wikidata.org/wiki/Q24780812","display_name":"Lactose permease","level":5,"score":0.9124480485916138},{"id":"https://openalex.org/C189542057","wikidata":"https://www.wikidata.org/wiki/Q242310","display_name":"Bacteriorhodopsin","level":3,"score":0.7561393976211548},{"id":"https://openalex.org/C118892022","wikidata":"https://www.wikidata.org/wiki/Q7834587","display_name":"Transmembrane domain","level":3,"score":0.5879206657409668},{"id":"https://openalex.org/C2778530040","wikidata":"https://www.wikidata.org/wiki/Q1937315","display_name":"Helix (gastropod)","level":3,"score":0.5714440941810608},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.5514546036720276},{"id":"https://openalex.org/C24530287","wikidata":"https://www.wikidata.org/wiki/Q424204","display_name":"Transmembrane protein","level":3,"score":0.5360363721847534},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.5054690837860107},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.49646860361099243},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4884442389011383},{"id":"https://openalex.org/C144647389","wikidata":"https://www.wikidata.org/wiki/Q423042","display_name":"Membrane protein","level":3,"score":0.43678534030914307},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3882109522819519},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3524383306503296},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3261517584323883},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.2618896961212158},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22441846132278442},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17347657680511475},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.16720128059387207},{"id":"https://openalex.org/C115335371","wikidata":"https://www.wikidata.org/wiki/Q142943","display_name":"Membrane transport protein","level":4,"score":0.14561641216278076},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.12949538230895996},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C2779965526","wikidata":"https://www.wikidata.org/wiki/Q308841","display_name":"Snail","level":2,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bth939","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth939","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15262790","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15262790","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320319059","display_name":"Clore Israel Foundation","ror":"https://ror.org/00mmfdg02"},{"id":"https://openalex.org/F4320322248","display_name":"Israel Academy of Sciences and Humanities","ror":"https://ror.org/03c6c9520"},{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"},{"id":"https://openalex.org/F4320322596","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1510774549","https://openalex.org/W1972868248","https://openalex.org/W1993022573","https://openalex.org/W1994373739","https://openalex.org/W2008708467","https://openalex.org/W2018562664","https://openalex.org/W2026976121","https://openalex.org/W2027711565","https://openalex.org/W2034410027","https://openalex.org/W2037846060","https://openalex.org/W2045994733","https://openalex.org/W2047163848","https://openalex.org/W2063044149","https://openalex.org/W2063249275","https://openalex.org/W2065509725","https://openalex.org/W2067484689","https://openalex.org/W2074182813","https://openalex.org/W2118259597","https://openalex.org/W2123530749","https://openalex.org/W2149906774","https://openalex.org/W2152582781","https://openalex.org/W2155147384","https://openalex.org/W2160535028","https://openalex.org/W2166110558"],"related_works":["https://openalex.org/W2013118316","https://openalex.org/W1976672938","https://openalex.org/W1987025745","https://openalex.org/W2741843671","https://openalex.org/W215086078","https://openalex.org/W1997903251","https://openalex.org/W1990267833","https://openalex.org/W1986078734","https://openalex.org/W2064220214","https://openalex.org/W4205611375"],"abstract_inverted_index":{"MOTIVATION:":[0],"Transmembrane":[1],"(TM)":[2],"proteins":[3,29],"that":[4,105,148],"form":[5],"alpha-helix":[6,115],"bundles":[7],"constitute":[8],"approximately":[9],"50%":[10],"of":[11,55,113,119,135,162,164,196,206,229],"contemporary":[12],"drug":[13],"targets.":[14],"Yet,":[15],"it":[16],"is":[17,124],"difficult":[18],"to":[19,33,60,80,212],"determine":[20],"their":[21],"high-resolution":[22],"(<":[23],"4":[24],"A)":[25],"structures.":[26,86],"Some":[27],"TM":[28,56,74,93,133,167,193],"yield":[30],"more":[31],"easily":[32],"structure":[34],"determination":[35],"using":[36],"cryo":[37],"electron":[38],"microscopy":[39],"(cryo-EM),":[40],"though":[41],"this":[42],"technique":[43],"most":[44,121,195],"often":[45],"results":[46,146],"in":[47,64,76,84,110,186],"lower":[48],"resolution":[49],"structures,":[50,137],"precluding":[51],"an":[52],"unambiguous":[53],"assignment":[54,171],"amino":[57],"acid":[58],"sequences":[59],"the":[61,65,73,77,81,111,120,129,142,155,160,181,187,216,226],"helices":[62,82],"seen":[63,83],"structure.":[66],"We":[67,127],"present":[68],"computational":[69],"tools":[70],"for":[71],"assigning":[72],"segments":[75],"protein's":[78],"sequence":[79],"cryo-EM":[85],"RESULTS:":[87],"The":[88,169,223],"method":[89,130],"examines":[90],"all":[91],"feasible":[92],"helix":[94],"assignments":[95,123,150,209],"and":[96,141,176,215,225],"ranks":[97],"each":[98],"one":[99,218],"based":[100],"on":[101,131],"a":[102,173],"score":[103],"function":[104],"was":[106,177,219],"derived":[107],"from":[108],"loops":[109],"structures":[112,231],"soluble":[114],"bundles.":[116],"A":[117],"set":[118,228],"likely":[122],"then":[125],"suggested.":[126],"tested":[128],"eight":[132],"chains":[134],"known":[136],"such":[138],"as":[139],"bacteriorhodopsin":[140],"lactose":[143,188],"permease.":[144],"Our":[145],"indicate":[147],"many":[149],"can":[151],"be":[152,213],"rejected":[153],"at":[154,236],"outset,":[156],"since":[157],"they":[158],"involve":[159],"connection":[161],"pairs":[163],"remotely":[165],"placed":[166],"helices.":[168],"correct":[170],"received":[172],"high":[174],"score,":[175],"ranked":[178,220],"highly":[179],"among":[180],"remaining":[182],"assignments.":[183],"For":[184],"example,":[185],"permease,":[189],"which":[190,197],"contains":[191],"12":[192,204],"helices,":[194],"are":[198,234],"connected":[199],"by":[200],"short":[201],"loops,":[202],"only":[203],"out":[205],"479":[207],"million":[208],"were":[210],"found":[211],"feasible,":[214],"native":[217],"first.":[221],"AVAILABILITY:":[222],"program":[224],"non-redundant":[227],"protein":[230],"used":[232],"here":[233],"available":[235],"http://www.cs.tau.ac.il/~angela":[237]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
