{"id":"https://openalex.org/W2167679437","doi":"https://doi.org/10.1093/bioinformatics/bth460","title":"Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting","display_name":"Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting","publication_year":2004,"publication_date":"2004-08-05","ids":{"openalex":"https://openalex.org/W2167679437","doi":"https://doi.org/10.1093/bioinformatics/bth460","mag":"2167679437","pmid":"https://pubmed.ncbi.nlm.nih.gov/15297302"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth460","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3628/48906615/bioinformatics_20_18_3628.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3628/48906615/bioinformatics_20_18_3628.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028899513","display_name":"Jim Samuelsson","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jim Samuelsson","raw_affiliation_strings":["Genedata GmbH, Lena-Christ-Strasse 50, 82152 Martinsried, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genedata GmbH, Lena-Christ-Strasse 50, 82152 Martinsried, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081024973","display_name":"Daniel Dalevi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel Dalevi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049893313","display_name":"Fredrik Levander","orcid":"https://orcid.org/0000-0002-0710-9792"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fredrik Levander","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5019978147","display_name":"Thorsteinn R\u00f6gnvaldsson","orcid":"https://orcid.org/0000-0001-5163-2997"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thorsteinn R\u00f6gnvaldsson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.021,"has_fulltext":false,"cited_by_count":75,"citation_normalized_percentile":{"value":0.97197713,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"20","issue":"18","first_page":"3628","last_page":"3635"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.004800000227987766,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7582565546035767},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6707049608230591},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.666522204875946},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6425877809524536},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.491854190826416},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.48743441700935364},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.45350977778434753},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4498714804649353},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.4350310266017914},{"id":"https://openalex.org/keywords/peptide-mass-fingerprinting","display_name":"Peptide mass fingerprinting","score":0.42293423414230347},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.42049872875213623},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36777549982070923},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3548418879508972},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.29177188873291016},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2662367522716522},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.24489465355873108},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09897089004516602}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7582565546035767},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6707049608230591},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.666522204875946},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6425877809524536},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.491854190826416},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.48743441700935364},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.45350977778434753},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4498714804649353},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.4350310266017914},{"id":"https://openalex.org/C27420735","wikidata":"https://www.wikidata.org/wiki/Q5968721","display_name":"Peptide mass fingerprinting","level":4,"score":0.42293423414230347},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.42049872875213623},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36777549982070923},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3548418879508972},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.29177188873291016},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2662367522716522},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.24489465355873108},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09897089004516602},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bth460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth460","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3628/48906615/bioinformatics_20_18_3628.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15297302","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15297302","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:lup.lub.lu.se:7bf87a20-0bd7-4d61-a192-23db19dd2aed","is_oa":false,"landing_page_url":"https://lup.lub.lu.se/record/259047","pdf_url":null,"source":{"id":"https://openalex.org/S4306400536","display_name":"Lund University Publications (Lund University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I187531555","host_organization_name":"Lund University","host_organization_lineage":["https://openalex.org/I187531555"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth460","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3628/48906615/bioinformatics_20_18_3628.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1964443249","https://openalex.org/W1977257584","https://openalex.org/W1981593008","https://openalex.org/W1985560593","https://openalex.org/W1998090254","https://openalex.org/W2001007352","https://openalex.org/W2005300839","https://openalex.org/W2006875881","https://openalex.org/W2035248958","https://openalex.org/W2045592818","https://openalex.org/W2048925508","https://openalex.org/W2055063265","https://openalex.org/W2058590378","https://openalex.org/W2059443859","https://openalex.org/W2061768348","https://openalex.org/W2063502140","https://openalex.org/W2079608781","https://openalex.org/W2082006641","https://openalex.org/W2095013942","https://openalex.org/W2110739536","https://openalex.org/W2137238178","https://openalex.org/W2158714788"],"related_works":["https://openalex.org/W2046765700","https://openalex.org/W4384345686","https://openalex.org/W262455470","https://openalex.org/W4242899858","https://openalex.org/W2145834781","https://openalex.org/W2357937784","https://openalex.org/W2547618384","https://openalex.org/W2577782152","https://openalex.org/W2356327704","https://openalex.org/W4240746485"],"abstract_inverted_index":{"UNLABELLED:":[0],"A":[1,179],"set":[2],"of":[3,102,172,204,218,237],"new":[4],"algorithms":[5,85,207,239],"and":[6,24,31,55,59,75,93,100,114,122,169],"software":[7,20,48,72,104,224],"tools":[8,140,225],"for":[9,144,164,182],"automatic":[10],"protein":[11,56,184],"identification":[12,119,126,185],"using":[13],"peptide":[14,187],"mass":[15,111,128,188],"fingerprinting":[16],"is":[17,21,105,131,190],"presented.":[18],"The":[19,47,84,98,202,222],"automatic,":[22],"fast":[23],"modular":[25],"to":[26,81,88,197],"suit":[27],"different":[28,110,146,206],"laboratory":[29],"needs,":[30],"it":[32],"can":[33,65,214],"be":[34,68],"operated":[35],"either":[36],"via":[37,61],"a":[38,132,152],"Java":[39],"user":[40],"interface":[41],"or":[42],"called":[43],"from":[44,109,194,228,246],"within":[45],"scripts.":[46],"modules":[49,64],"do":[50],"peak":[51,53,195],"extraction,":[52],"filtering":[54],"database":[57,200],"matching,":[58],"communicate":[60],"XML.":[62],"Individual":[63],"therefore":[66],"easily":[67],"replaced":[69],"with":[70,127,186],"other":[71],"if":[73],"desired,":[74],"all":[76,157],"intermediate":[77],"results":[78],"are":[79,86,120,141,175,208,226,240],"available":[80,142,227,245],"the":[82,103,115,149,158,161,170,199,205,229,238,247],"user.":[83],"designed":[87],"operate":[89],"without":[90],"human":[91],"intervention":[92],"contain":[94],"several":[95],"novel":[96],"approaches.":[97],"performance":[99],"capabilities":[101],"illustrated":[106],"on":[107],"spectra":[108],"spectrometer":[112],"manufacturers,":[113],"factors":[116],"influencing":[117],"successful":[118],"discussed":[121],"quantified.":[123],"MOTIVATION:":[124],"Protein":[125],"spectrometric":[129],"methods":[130],"key":[133],"step":[134],"in":[135,148,160,242],"modern":[136],"proteomics":[137],"studies.":[138],"Some":[139],"today":[143],"doing":[145,183],"steps":[147,159],"analysis.":[150],"Only":[151],"few":[153],"commercial":[154],"systems":[155,174],"integrate":[156],"analysis,":[162],"often":[163],"only":[165],"one":[166],"vendor's":[167],"hardware,":[168],"details":[171,203],"these":[173],"not":[176],"public.":[177],"RESULTS:":[178],"complete":[180],"system":[181],"fingerprints":[189],"presented,":[191],"including":[192],"everything":[193],"picking":[196],"matching":[198],"protein.":[201],"disclosed":[209],"so":[210],"that":[211],"academic":[212],"researchers":[213],"have":[215],"full":[216],"control":[217],"their":[219],"tools.":[220],"AVAILABILITY:":[221],"described":[223,241],"Halmstad":[230,248],"University":[231,249],"website":[232,250],"www.hh.se/staff/bioinf/":[233,251],"SUPPLEMENTARY":[234],"INFORMATION:":[235],"Details":[236],"supporting":[243],"information":[244]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}