{"id":"https://openalex.org/W2096792280","doi":"https://doi.org/10.1093/bioinformatics/bth424","title":"Microarray Data Analysis Toolbox (MDAT): for normalization, adjustment and analysis of gene expression data","display_name":"Microarray Data Analysis Toolbox (MDAT): for normalization, adjustment and analysis of gene expression data","publication_year":2004,"publication_date":"2004-07-22","ids":{"openalex":"https://openalex.org/W2096792280","doi":"https://doi.org/10.1093/bioinformatics/bth424","mag":"2096792280","pmid":"https://pubmed.ncbi.nlm.nih.gov/15271778"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth424","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth424","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3687/521115/bth424.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3687/521115/bth424.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029835500","display_name":"Nicholas Knowlton","orcid":"https://orcid.org/0000-0002-7022-3352"},"institutions":[{"id":"https://openalex.org/I30558944","display_name":"Oklahoma Medical Research Foundation","ror":"https://ror.org/035z6xf33","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I30558944"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nicholas Knowlton","raw_affiliation_strings":["Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA","Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA","institution_ids":["https://openalex.org/I30558944"]},{"raw_affiliation_string":"Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA#TAB#","institution_ids":["https://openalex.org/I30558944"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046941357","display_name":"Igor Dozmorov","orcid":"https://orcid.org/0000-0001-6517-8406"},"institutions":[{"id":"https://openalex.org/I30558944","display_name":"Oklahoma Medical Research Foundation","ror":"https://ror.org/035z6xf33","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I30558944"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Igor M. Dozmorov","raw_affiliation_strings":["Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA","Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA","institution_ids":["https://openalex.org/I30558944"]},{"raw_affiliation_string":"Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA#TAB#","institution_ids":["https://openalex.org/I30558944"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078634023","display_name":"Michael Centola","orcid":"https://orcid.org/0009-0008-7000-9007"},"institutions":[{"id":"https://openalex.org/I30558944","display_name":"Oklahoma Medical Research Foundation","ror":"https://ror.org/035z6xf33","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I30558944"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Centola","raw_affiliation_strings":["Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA","Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA","institution_ids":["https://openalex.org/I30558944"]},{"raw_affiliation_string":"Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, 825 NE 13 Street, RP Rm 461 MS: 58, Oklahoma City, OK 73104, USA#TAB#","institution_ids":["https://openalex.org/I30558944"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029835500"],"corresponding_institution_ids":["https://openalex.org/I30558944"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.1694,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.76262504,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"20","issue":"18","first_page":"3687","last_page":"3690"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.9534238576889038},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.7663322687149048},{"id":"https://openalex.org/keywords/matlab","display_name":"MATLAB","score":0.7594050765037537},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7196455597877502},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.6615734100341797},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6000038981437683},{"id":"https://openalex.org/keywords/database-normalization","display_name":"Database normalization","score":0.5924837589263916},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.46670982241630554},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.4594927430152893},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44388243556022644},{"id":"https://openalex.org/keywords/statistical-analysis","display_name":"Statistical analysis","score":0.4313299059867859},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32082900404930115},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30307191610336304},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.273821622133255},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.23783603310585022},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.174337238073349},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1658528745174408},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.16140010952949524},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12447968125343323},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11764970421791077}],"concepts":[{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.9534238576889038},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.7663322687149048},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.7594050765037537},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7196455597877502},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.6615734100341797},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6000038981437683},{"id":"https://openalex.org/C162984825","wikidata":"https://www.wikidata.org/wiki/Q339072","display_name":"Database normalization","level":3,"score":0.5924837589263916},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.46670982241630554},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.4594927430152893},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44388243556022644},{"id":"https://openalex.org/C2986587452","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical analysis","level":2,"score":0.4313299059867859},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32082900404930115},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30307191610336304},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.273821622133255},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.23783603310585022},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.174337238073349},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1658528745174408},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.16140010952949524},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12447968125343323},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11764970421791077},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bth424","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth424","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3687/521115/bth424.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15271778","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15271778","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth424","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth424","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3687/521115/bth424.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096792280.pdf","grobid_xml":"https://content.openalex.org/works/W2096792280.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1562450815","https://openalex.org/W1807523634","https://openalex.org/W2020333397","https://openalex.org/W2040482262","https://openalex.org/W2046944528","https://openalex.org/W2106507796","https://openalex.org/W2107950327","https://openalex.org/W2117254794","https://openalex.org/W2156564301"],"related_works":["https://openalex.org/W2353433747","https://openalex.org/W2096792280","https://openalex.org/W2037458463","https://openalex.org/W4384911850","https://openalex.org/W2110940238","https://openalex.org/W2169341838","https://openalex.org/W2369138932","https://openalex.org/W154018598","https://openalex.org/W2006956706","https://openalex.org/W1978657017"],"abstract_inverted_index":{"MDAT":[0,11],"v1.0":[1],"is":[2,12],"a":[3],"Matlab":[4,8],"toolbox":[5],"and":[6],"requires":[7],"to":[9],"run.":[10],"freely":[13],"available":[14],"at":[15],"http://microarray.omrf.org/publications/2004/knowlton/MDAT.zip.":[16]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
