{"id":"https://openalex.org/W2117921528","doi":"https://doi.org/10.1093/bioinformatics/bth420","title":"DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions","display_name":"DNAfan: a software tool for automated extraction and analysis of user-defined sequence regions","publication_year":2004,"publication_date":"2004-07-15","ids":{"openalex":"https://openalex.org/W2117921528","doi":"https://doi.org/10.1093/bioinformatics/bth420","mag":"2117921528","pmid":"https://pubmed.ncbi.nlm.nih.gov/15256403"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth420","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth420","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3676/48906511/bioinformatics_20_18_3676.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3676/48906511/bioinformatics_20_18_3676.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043468281","display_name":"Andreas Gisel","orcid":"https://orcid.org/0000-0001-7218-9488"},"institutions":[{"id":"https://openalex.org/I4210112283","display_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Bari","ror":"https://ror.org/022hq6c49","country_code":"IT","type":"facility","lineage":["https://openalex.org/I160013858","https://openalex.org/I4210112283"]},{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Andreas Gisel","raw_affiliation_strings":["Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy","Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy","institution_ids":["https://openalex.org/I4210112283"]},{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110772799","display_name":"Maria Panetta","orcid":null},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Maria Panetta","raw_affiliation_strings":["Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,","Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082373890","display_name":"Giorgio Grillo","orcid":"https://orcid.org/0000-0002-0137-5811"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giorgio Grillo","raw_affiliation_strings":["Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,","Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Vito Flavio Licciulli","orcid":null},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Vito Flavio Licciulli","raw_affiliation_strings":["Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,","Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071448625","display_name":"Sabino Liuni","orcid":"https://orcid.org/0000-0002-4444-9702"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Sabino Liuni","raw_affiliation_strings":["Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,","Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055915244","display_name":"Cecilia Saccone","orcid":null},"institutions":[{"id":"https://openalex.org/I4210112283","display_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Bari","ror":"https://ror.org/022hq6c49","country_code":"IT","type":"facility","lineage":["https://openalex.org/I160013858","https://openalex.org/I4210112283"]},{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Cecilia Saccone","raw_affiliation_strings":["Dipartimento di Biochimica e Biologia Molecolare, Universit di Bari, Via Orabona 4, 70125 Bari, Italy and","Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,","Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Biochimica e Biologia Molecolare, Universit di Bari, Via Orabona 4, 70125 Bari, Italy and","institution_ids":["https://openalex.org/I4210112283","https://openalex.org/I5561750"]},{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":"Sezione di Bioinformatica e Genomica di Bari, Istituto di Tecnologie Biomediche, CNR, via Amendola 122/D, 70126 Bari, Italy,#TAB#","institution_ids":["https://openalex.org/I4210154278"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005312066","display_name":"Graziano Pesole","orcid":"https://orcid.org/0000-0003-3663-0859"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Graziano Pesole","raw_affiliation_strings":["Dipartimento di Scienze Biomolecolari e Biotecnologie, Universit di Milano, Via Celoria 26, 20133 Milano, Italy","Dipartimento di Scienze Biomolecolari e Biotecnologie. Universita' di Milano. Via Celoria 26, 20133 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienze Biomolecolari e Biotecnologie, Universit di Milano, Via Celoria 26, 20133 Milano, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"Dipartimento di Scienze Biomolecolari e Biotecnologie. Universita' di Milano. Via Celoria 26, 20133 Milano, Italy","institution_ids":["https://openalex.org/I189158943"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5043468281"],"corresponding_institution_ids":["https://openalex.org/I4210112283","https://openalex.org/I4210154278"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4534,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.60531957,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"20","issue":"18","first_page":"3676","last_page":"3679"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.6290000081062317,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.6290000081062317,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.16760000586509705,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.05869999900460243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6449998021125793},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.639910101890564},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5946894288063049},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.5705997943878174},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.5610306859016418},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.549106776714325},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5402732491493225},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5098299384117126},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.44746196269989014},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.41683465242385864},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4150998294353485},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4120294153690338},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33903968334198},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24141865968704224},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19873836636543274},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.12947580218315125},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12501174211502075},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10760420560836792}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6449998021125793},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.639910101890564},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5946894288063049},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.5705997943878174},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.5610306859016418},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.549106776714325},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5402732491493225},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5098299384117126},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.44746196269989014},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.41683465242385864},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4150998294353485},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4120294153690338},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33903968334198},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24141865968704224},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19873836636543274},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.12947580218315125},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12501174211502075},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10760420560836792},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bth420","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth420","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3676/48906511/bioinformatics_20_18_3676.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15256403","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15256403","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.601.8392","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.601.8392","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2004/07/15/bioinformatics.bth420.full.pdf","raw_type":"text"},{"id":"pmh:oai:ricerca.uniba.it:11586/56329","is_oa":false,"landing_page_url":"http://hdl.handle.net/11586/56329","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth420","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth420","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/18/3676/48906511/bioinformatics_20_18_3676.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2117921528.pdf","grobid_xml":"https://content.openalex.org/works/W2117921528.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1999966058","https://openalex.org/W2000475060","https://openalex.org/W2065398612","https://openalex.org/W2084283653","https://openalex.org/W2097920884","https://openalex.org/W2110041134","https://openalex.org/W2120248467","https://openalex.org/W2144548050","https://openalex.org/W2146453000","https://openalex.org/W2272769530","https://openalex.org/W4255619361"],"related_works":["https://openalex.org/W579810227","https://openalex.org/W2952780262","https://openalex.org/W2979495269","https://openalex.org/W2392917763","https://openalex.org/W2037896692","https://openalex.org/W2136066520","https://openalex.org/W2354598492","https://openalex.org/W2581600691","https://openalex.org/W2183615490","https://openalex.org/W2028473472"],"abstract_inverted_index":{"SUMMARY:":[0],"DNAfan":[1,13,76,87],"(DNA":[2],"Feature":[3],"ANalyzer)":[4],"is":[5,88],"a":[6,50,89,103],"tool":[7,53,91],"combining":[8],"sequence-filtering":[9],"and":[10,33,49,55],"pattern":[11,93,100],"searching.":[12],"automatically":[14],"extracts":[15,56],"user-defined":[16],"sets":[17],"of":[18,60,81,106],"sequence":[19,23,64],"fragments":[20],"from":[21],"large":[22],"sets.":[24],"Fragments":[25],"are":[26],"defined":[27],"by":[28],"annotated":[29],"gene":[30,46],"feature":[31,40,47],"keys":[32],"co-":[34],"or":[35,41,72,84],"non-occurring":[36],"patterns":[37,83],"within":[38],"the":[39,57,79,99],"close":[42],"to":[43,77,102],"it.":[44],"A":[45],"parser":[48],"pattern-based":[51],"filter":[52,96],"localizes":[54],"specific":[58,82],"subset":[59],"sequences.":[61],"The":[62],"selected":[63],"data":[65],"can":[66],"subsequently":[67],"be":[68],"retrieved":[69],"for":[70,92],"analyses":[71],"further":[73],"processed":[74],"with":[75],"find":[78],"occurrence":[80],"structural":[85],"motifs.":[86],"powerful":[90],"analysis.":[94],"Its":[95],"features":[97],"restricts":[98],"search":[101],"well-defined":[104],"set":[105],"sequences,":[107],"allowing":[108],"drastic":[109],"reduction":[110],"in":[111],"false":[112],"positive":[113],"hits.":[114],"AVAILABILITY:":[115],"http://bighost.ba.itb.cnr.it:8080/Framework.":[116]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
