{"id":"https://openalex.org/W2147096538","doi":"https://doi.org/10.1093/bioinformatics/bth352","title":"Automatic annotation of organellar genomes with DOGMA","display_name":"Automatic annotation of organellar genomes with DOGMA","publication_year":2004,"publication_date":"2004-06-04","ids":{"openalex":"https://openalex.org/W2147096538","doi":"https://doi.org/10.1093/bioinformatics/bth352","mag":"2147096538","pmid":"https://pubmed.ncbi.nlm.nih.gov/15180927"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth352","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth352","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/17/3252/455701/bth352.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/17/3252/455701/bth352.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034519888","display_name":"Stacia K. Wyman","orcid":"https://orcid.org/0000-0002-8937-8397"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stacia K. Wyman","raw_affiliation_strings":["Department of Computer Sciences, Institute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA. stacia@cs.utexas.edu","Department of Computer Sciences#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, Institute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA. stacia@cs.utexas.edu","institution_ids":["https://openalex.org/I86519309"]},{"raw_affiliation_string":"Department of Computer Sciences#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001121649","display_name":"Robert K. Jansen","orcid":"https://orcid.org/0000-0002-0662-9032"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert K. Jansen","raw_affiliation_strings":["Section of Integrative Biology, Institute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA and","Section of Integrative Biology, Institute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Section of Integrative Biology, Institute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA and","institution_ids":["https://openalex.org/I86519309"]},{"raw_affiliation_string":"Section of Integrative Biology, Institute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA#TAB#","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039696693","display_name":"Jeffrey L. Boore","orcid":"https://orcid.org/0000-0001-6751-4549"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey L. Boore","raw_affiliation_strings":["DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA#TAB#","institution_ids":["https://openalex.org/I196679689"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5034519888"],"corresponding_institution_ids":["https://openalex.org/I86519309"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":7.5971,"has_fulltext":true,"cited_by_count":3115,"citation_normalized_percentile":{"value":0.98250153,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"20","issue":"17","first_page":"3252","last_page":"3255"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7953298091888428},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7302524447441101},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.686799943447113},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6109660863876343},{"id":"https://openalex.org/keywords/password","display_name":"Password","score":0.4293726086616516},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3998562693595886},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3256390690803528},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.264830619096756},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2601373493671417},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1156139075756073}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7953298091888428},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7302524447441101},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.686799943447113},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6109660863876343},{"id":"https://openalex.org/C109297577","wikidata":"https://www.wikidata.org/wiki/Q161157","display_name":"Password","level":2,"score":0.4293726086616516},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3998562693595886},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3256390690803528},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.264830619096756},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2601373493671417},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1156139075756073},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008928","descriptor_name":"Mitochondria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008928","descriptor_name":"Mitochondria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008928","descriptor_name":"Mitochondria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/bth352","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth352","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/17/3252/455701/bth352.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15180927","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15180927","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:info:ark/67531/metadc788591","is_oa":false,"landing_page_url":"https://digital.library.unt.edu/ark:/67531/metadc788591/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400792","display_name":"University of North Texas Digital Library (University of North Texas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123534392","host_organization_name":"University of North Texas","host_organization_lineage":["https://openalex.org/I123534392"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Submitted to Bioinformatics: Volume 20, No.17; Journal Publication Date: 11/22/2004","raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.599.7620","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.599.7620","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2004/06/04/bioinformatics.bth352.full.pdf","raw_type":"text"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt9bd279qd","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/9bd279qd","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:osti.gov:836973","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/836973","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:qt9bd279qd","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/9bd279qd","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Wyman, Stacia; Jansen, Robert K.; &amp; Boore, Jeffrey L.(2004). Automatic annotation of organellar genomes with DOGMA. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/9bd279qd","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth352","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth352","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/17/3252/455701/bth352.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1643223109","display_name":null,"funder_award_id":"AC03-76SF00098","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G284709842","display_name":"IGERT:  Computational Phylogenetics and Applications to Biology","funder_award_id":"0114387","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3451091241","display_name":null,"funder_award_id":"DE-AC03-76SF00098","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G4323016164","display_name":null,"funder_award_id":"DE-AC03-76SF00098","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6636457713","display_name":null,"funder_award_id":"6SF00098","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7245193638","display_name":null,"funder_award_id":"DE-AC03","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7500662759","display_name":null,"funder_award_id":"DE-AC03-76SF00","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8099852790","display_name":null,"funder_award_id":"DE-AC03-76SF00098","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8164471825","display_name":null,"funder_award_id":"IGERT","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320338292","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147096538.pdf","grobid_xml":"https://content.openalex.org/works/W2147096538.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W87975619","https://openalex.org/W1765516395","https://openalex.org/W1974130974","https://openalex.org/W2011368877","https://openalex.org/W2026197201","https://openalex.org/W2044494908","https://openalex.org/W2053231139","https://openalex.org/W2055043387","https://openalex.org/W2089814091","https://openalex.org/W2101348412","https://openalex.org/W2124574608","https://openalex.org/W2155685186","https://openalex.org/W2160672070","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W1993070549","https://openalex.org/W4250169950","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W1906885765","https://openalex.org/W4232951075","https://openalex.org/W143386018","https://openalex.org/W4386946098","https://openalex.org/W4238968199"],"abstract_inverted_index":{"The":[0],"Dual":[1],"Organellar":[2],"GenoMe":[3],"Annotator":[4],"(DOGMA)":[5],"automates":[6],"the":[7,24,38,75],"annotation":[8],"of":[9,26,35,41,72],"organellar":[10],"(plant":[11],"chloroplast":[12],"and":[13,33,47,58],"animal":[14,42],"mitochondrial)":[15],"genomes.":[16],"It":[17],"is":[18],"a":[19,30,52],"Web-based":[20],"package":[21],"that":[22],"allows":[23],"use":[25],"BLAST":[27],"searches":[28],"against":[29],"custom":[31],"database,":[32],"conservation":[34],"basepairing":[36],"in":[37],"secondary":[39],"structure":[40],"mitochondrial":[43],"tRNAs":[44],"to":[45,68,86],"identify":[46],"annotate":[48],"genes.":[49],"DOGMA":[50],"provides":[51],"graphical":[53],"user":[54],"interface":[55],"for":[56,83],"viewing":[57],"editing":[59],"annotations.":[60],"Annotations":[61],"are":[62],"stored":[63],"on":[64,74],"our":[65],"password-protected":[66],"server":[67],"enable":[69],"repeated":[70],"sessions":[71],"working":[73],"same":[76],"genome.":[77],"Finished":[78],"annotations":[79],"can":[80],"be":[81],"extracted":[82],"direct":[84],"submission":[85],"GenBank.":[87]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":93},{"year":2023,"cited_by_count":94},{"year":2022,"cited_by_count":156},{"year":2021,"cited_by_count":244},{"year":2020,"cited_by_count":389},{"year":2019,"cited_by_count":527},{"year":2018,"cited_by_count":315},{"year":2017,"cited_by_count":273},{"year":2016,"cited_by_count":230},{"year":2015,"cited_by_count":248},{"year":2014,"cited_by_count":164},{"year":2013,"cited_by_count":84},{"year":2012,"cited_by_count":73}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
