{"id":"https://openalex.org/W2140291633","doi":"https://doi.org/10.1093/bioinformatics/bth316","title":"FigSearch: a figure legend indexing and classification system","display_name":"FigSearch: a figure legend indexing and classification system","publication_year":2004,"publication_date":"2004-05-14","ids":{"openalex":"https://openalex.org/W2140291633","doi":"https://doi.org/10.1093/bioinformatics/bth316","mag":"2140291633"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth316","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth316","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/16/2880/48906427/bioinformatics_20_16_2880.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/16/2880/48906427/bioinformatics_20_16_2880.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064662152","display_name":"Fang Liu","orcid":"https://orcid.org/0000-0003-1322-4997"},"institutions":[{"id":"https://openalex.org/I2801049993","display_name":"Norwegian Cancer Society","ror":"https://ror.org/01925vb10","country_code":"NO","type":"nonprofit","lineage":["https://openalex.org/I2801049993"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Fang Liu","raw_affiliation_strings":["Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Montebello, 0310 Oslo, Norway,#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Montebello, 0310 Oslo, Norway,#TAB#","institution_ids":["https://openalex.org/I2801049993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037525573","display_name":"Tor-Kristian Jenssen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210087674","display_name":"PubGene (Norway)","ror":"https://ror.org/002jt8031","country_code":"NO","type":"company","lineage":["https://openalex.org/I4210087674"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Tor-Kristian Jenssen","raw_affiliation_strings":["PubGene AS, Forskningsveien 2A, P.O. BOX 180 Vinderen, N-0319 Oslo, Norway#TAB#"],"affiliations":[{"raw_affiliation_string":"PubGene AS, Forskningsveien 2A, P.O. BOX 180 Vinderen, N-0319 Oslo, Norway#TAB#","institution_ids":["https://openalex.org/I4210087674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021161507","display_name":"Vegard Nygaard","orcid":null},"institutions":[{"id":"https://openalex.org/I2801049993","display_name":"Norwegian Cancer Society","ror":"https://ror.org/01925vb10","country_code":"NO","type":"nonprofit","lineage":["https://openalex.org/I2801049993"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Vegard Nygaard","raw_affiliation_strings":["Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Montebello, 0310 Oslo, Norway,#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Montebello, 0310 Oslo, Norway,#TAB#","institution_ids":["https://openalex.org/I2801049993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015264055","display_name":"John Sack","orcid":"https://orcid.org/0000-0001-7113-5250"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Sack","raw_affiliation_strings":["Stanford University, HighWire Press, 1454 Page Mill Road, Palo Alto, CA 94304, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Stanford University, HighWire Press, 1454 Page Mill Road, Palo Alto, CA 94304, USA#TAB#","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083493986","display_name":"Eivind Hovig","orcid":"https://orcid.org/0000-0002-9103-1077"},"institutions":[{"id":"https://openalex.org/I2801049993","display_name":"Norwegian Cancer Society","ror":"https://ror.org/01925vb10","country_code":"NO","type":"nonprofit","lineage":["https://openalex.org/I2801049993"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Eivind Hovig","raw_affiliation_strings":["Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Montebello, 0310 Oslo, Norway,#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Tumor Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Montebello, 0310 Oslo, Norway,#TAB#","institution_ids":["https://openalex.org/I2801049993"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5064662152"],"corresponding_institution_ids":["https://openalex.org/I2801049993"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0525,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.74646337,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"20","issue":"16","first_page":"2880","last_page":"2882"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9661999940872192,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9496999979019165,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.8286749720573425},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6211181879043579},{"id":"https://openalex.org/keywords/legend","display_name":"Legend","score":0.6108667850494385},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4229663610458374},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38597774505615234},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3750477433204651},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33211326599121094},{"id":"https://openalex.org/keywords/history","display_name":"History","score":0.17529404163360596},{"id":"https://openalex.org/keywords/art-history","display_name":"Art history","score":0.07724469900131226}],"concepts":[{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.8286749720573425},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6211181879043579},{"id":"https://openalex.org/C2776142151","wikidata":"https://www.wikidata.org/wiki/Q44342","display_name":"Legend","level":2,"score":0.6108667850494385},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4229663610458374},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38597774505615234},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3750477433204651},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33211326599121094},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.17529404163360596},{"id":"https://openalex.org/C52119013","wikidata":"https://www.wikidata.org/wiki/Q50637","display_name":"Art history","level":1,"score":0.07724469900131226}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1093/bioinformatics/bth316","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth316","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/16/2880/48906427/bioinformatics_20_16_2880.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth316","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth316","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/16/2880/48906427/bioinformatics_20_16_2880.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.46000000834465027}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140291633.pdf","grobid_xml":"https://content.openalex.org/works/W2140291633.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1541931954","https://openalex.org/W2097106271","https://openalex.org/W2097898123","https://openalex.org/W2104768328","https://openalex.org/W2106093878","https://openalex.org/W2139259976","https://openalex.org/W2158040974","https://openalex.org/W2159203162","https://openalex.org/W2171667218"],"related_works":["https://openalex.org/W2316524451","https://openalex.org/W2356632601","https://openalex.org/W2393295755","https://openalex.org/W609353068","https://openalex.org/W2368453932","https://openalex.org/W2390190630","https://openalex.org/W2369061600","https://openalex.org/W1512714943","https://openalex.org/W2188505374","https://openalex.org/W1558342070"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"FigSearch":[2,97],"is":[3,150],"a":[4,42,50,67,72,86,93,131],"prototype":[5],"text-mining":[6],"and":[7,32,61,85,139],"classification":[8,75],"system":[9,20,65,98,132],"for":[10,25,70,74,88,154],"figures":[11,26,38,77,156],"from":[12,157],"any":[13],"corpus":[14],"of":[15,30,49,58,76,82],"full-text":[16,126],"biological":[17,142],"papers.":[18],"The":[19,36,64],"allows":[21],"users":[22],"to":[23,47,103,119],"search":[24],"that":[27],"contain":[28],"genes":[29],"interest":[31],"illustrate":[33],"protein":[34,59],"interactions.":[35],"retrieved":[37],"are":[39],"ranked":[40],"by":[41],"score":[43],"representing":[44],"the":[45,96,108,158],"likelihood":[46],"be":[48,116],"certain":[51],"type,":[52],"in":[53,106,137],"this":[54],"case,":[55],"schematic":[56],"illustrations":[57],"interactions":[60],"signaling":[62],"events.":[63],"contains":[66],"Web":[68,147],"interface":[69],"search,":[71],"module":[73,87],"based":[78],"on":[79],"vector":[80],"representations":[81],"figure":[83,121],"legends":[84],"indexing":[89],"gene":[90],"names.":[91],"In":[92],"preliminary":[94],"validation,":[95],"showed":[99],"satisfactory":[100],"performance":[101],"according":[102],"domain":[104],"experts":[105],"providing":[107],"most":[109],"relevant":[110],"graphical":[111],"representations.":[112],"This":[113],"strategy":[114],"may":[115],"easily":[117],"extended":[118],"other":[120],"types.":[122],"Moreover,":[123],"as":[124],"more":[125],"data":[127],"become":[128],"available,":[129],"such":[130],"will":[133],"find":[134],"increased":[135],"usefulness":[136],"identifying":[138],"presenting":[140],"compressed":[141],"knowledge.":[143],"Availability:":[144],"A":[145],"searchable":[146],"interface,":[148],"FigSearch,":[149],"accessible":[151],"via":[152],"http://pubgeneserver.uio.no/figsearch/":[153],"all":[155],"available":[159],"corpus.":[160]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
