{"id":"https://openalex.org/W2167895990","doi":"https://doi.org/10.1093/bioinformatics/bth216","title":"GeConT: gene context analysis","display_name":"GeConT: gene context analysis","publication_year":2004,"publication_date":"2004-04-08","ids":{"openalex":"https://openalex.org/W2167895990","doi":"https://doi.org/10.1093/bioinformatics/bth216","mag":"2167895990","pmid":"https://pubmed.ncbi.nlm.nih.gov/15073003"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/14/2307/48906144/bioinformatics_20_14_2307.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/14/2307/48906144/bioinformatics_20_14_2307.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068721862","display_name":"Ricardo Ciria","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"R. Ciria","raw_affiliation_strings":["Departamento de Biolog\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, 62210 Morelos, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Biolog\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, 62210 Morelos, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014947740","display_name":"Cei Abreu\u2010Goodger","orcid":"https://orcid.org/0000-0001-8302-9893"},"institutions":[{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"C. Abreu-Goodger","raw_affiliation_strings":["Departamento de Biologa Celular y Biocatlisis, Instituto de Biotecnologa, Universidad Nacional Autnoma de Mxico, Cuernavaca, 62210 Morelos, Mxico","Departamento de Biolog\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, 62210 Morelos, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Biologa Celular y Biocatlisis, Instituto de Biotecnologa, Universidad Nacional Autnoma de Mxico, Cuernavaca, 62210 Morelos, Mxico","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Departamento de Biolog\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, 62210 Morelos, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039196751","display_name":"Enrique Morett","orcid":"https://orcid.org/0000-0001-5723-0032"},"institutions":[{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"E. Morett","raw_affiliation_strings":["Departamento de Biologa Celular y Biocatlisis, Instituto de Biotecnologa, Universidad Nacional Autnoma de Mxico, Cuernavaca, 62210 Morelos, Mxico","Departamento de Biolog\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, 62210 Morelos, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Biologa Celular y Biocatlisis, Instituto de Biotecnologa, Universidad Nacional Autnoma de Mxico, Cuernavaca, 62210 Morelos, Mxico","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Departamento de Biolog\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, 62210 Morelos, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076352222","display_name":"Enrique Merino","orcid":"https://orcid.org/0000-0002-0374-0640"},"institutions":[{"id":"https://openalex.org/I4210128723","display_name":"Instituto Nacional de Salud P\u00fablica","ror":"https://ror.org/032y0n460","country_code":"MX","type":"government","lineage":["https://openalex.org/I4210095685","https://openalex.org/I4210128723"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"E. Merino","raw_affiliation_strings":["Departamento de Biologa Celular y Biocatlisis, Instituto de Biotecnologa, Universidad Nacional Autnoma de Mxico, Cuernavaca, 62210 Morelos, Mxico","Departamento de Biolog\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, 62210 Morelos, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Biologa Celular y Biocatlisis, Instituto de Biotecnologa, Universidad Nacional Autnoma de Mxico, Cuernavaca, 62210 Morelos, Mxico","institution_ids":["https://openalex.org/I4210128723"]},{"raw_affiliation_string":"Departamento de Biolog\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, Cuernavaca, 62210 Morelos, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5039196751"],"corresponding_institution_ids":["https://openalex.org/I4210128723","https://openalex.org/I8961855"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.6515,"has_fulltext":true,"cited_by_count":57,"citation_normalized_percentile":{"value":0.90033113,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"20","issue":"14","first_page":"2307","last_page":"2308"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.767799973487854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.767799973487854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6640853881835938},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5270757079124451},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5262907147407532},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36521875858306885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31245237588882446}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6640853881835938},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5270757079124451},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5262907147407532},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36521875858306885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31245237588882446},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bth216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/14/2307/48906144/bioinformatics_20_14_2307.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15073003","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15073003","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1017.6469","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1017.6469","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/20/14/2307.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/14/2307/48906144/bioinformatics_20_14_2307.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167895990.pdf","grobid_xml":"https://content.openalex.org/works/W2167895990.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1558365920","https://openalex.org/W1768900202","https://openalex.org/W1995117714","https://openalex.org/W2034106962","https://openalex.org/W2101327327","https://openalex.org/W2106391842","https://openalex.org/W2127596034","https://openalex.org/W2155606054","https://openalex.org/W2158042078","https://openalex.org/W2158714788","https://openalex.org/W4240852056"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2013243191"],"abstract_inverted_index":{"SUMMARY:":[0],"The":[1,45],"fact":[2],"that":[3,72],"adjacent":[4],"genes":[5,35,71],"in":[6,39],"bacteria":[7],"are":[8],"often":[9],"functionally":[10],"related":[11],"is":[12,19],"widely":[13],"known.":[14],"GeConT":[15,49],"(Gene":[16],"Context":[17],"Tool)":[18],"a":[20,29,32,74],"web":[21],"interface":[22],"designed":[23],"to":[24,53,61],"visualize":[25],"genome":[26,55],"context":[27,65],"of":[28,34,48,67,70],"gene":[30],"or":[31,60],"group":[33],"and":[36],"their":[37],"orthologs":[38],"all":[40],"the":[41,63],"completely":[42],"sequenced":[43],"genomes.":[44],"graphical":[46],"information":[47],"can":[50],"be":[51],"used":[52],"analyze":[54],"annotation,":[56],"functional":[57],"ortholog":[58],"identification":[59],"verify":[62],"genomic":[64],"congruence":[66],"any":[68],"set":[69],"share":[73],"common":[75],"property.":[76],"AVAILABILITY:":[77],"http://www.ibt.unam.mx/biocomputo/gecont.html":[78]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
