{"id":"https://openalex.org/W2104863267","doi":"https://doi.org/10.1093/bioinformatics/bth203","title":"STING Contacts: a web-based application for identification and analysis of amino acid contacts within protein structure and across protein interfaces","display_name":"STING Contacts: a web-based application for identification and analysis of amino acid contacts within protein structure and across protein interfaces","publication_year":2004,"publication_date":"2004-04-08","ids":{"openalex":"https://openalex.org/W2104863267","doi":"https://doi.org/10.1093/bioinformatics/bth203","mag":"2104863267","pmid":"https://pubmed.ncbi.nlm.nih.gov/15073001"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth203","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth203","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/13/2145/48905874/bioinformatics_20_13_2145.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/13/2145/48905874/bioinformatics_20_13_2145.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038294401","display_name":"A. L. Mancini","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"A. L. Mancini","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113923068","display_name":"R. H. Higa","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"R. H. Higa","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001327675","display_name":"Arlindo L. Oliveira","orcid":"https://orcid.org/0000-0001-8638-5594"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"A. Oliveira","raw_affiliation_strings":["Laborat\u00f3rio de Bioinform\u00e1tica, Embrapa/Recursos Gen\u00e9ticos e Biotecnologia#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Bioinform\u00e1tica, Embrapa/Recursos Gen\u00e9ticos e Biotecnologia#TAB#","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080295975","display_name":"F. Dominiquini","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"F. Dominiquini","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058040518","display_name":"Paula R. Kuser","orcid":"https://orcid.org/0000-0002-0034-0932"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"P. R. Kuser","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066373426","display_name":"M. E. B. Yamagishi","orcid":"https://orcid.org/0000-0001-7109-3038"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"M. E. B. Yamagishi","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087789032","display_name":"Roberto Coiti Togawa","orcid":"https://orcid.org/0000-0001-7179-3210"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"R. C. Togawa","raw_affiliation_strings":["Laborat\u00f3rio de Bioinform\u00e1tica, Embrapa/Recursos Gen\u00e9ticos e Biotecnologia#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Bioinform\u00e1tica, Embrapa/Recursos Gen\u00e9ticos e Biotecnologia#TAB#","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076918011","display_name":"Goran Neshich","orcid":"https://orcid.org/0000-0003-4982-0416"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"G. Neshich","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica, Centro Nacional de Pesquisa Agropecu\u00e1ria, Empresa Brasileira de Pesquisa Agropecu\u00e1ria, Campinas, SP, Brazil","institution_ids":["https://openalex.org/I199691007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5038294401"],"corresponding_institution_ids":["https://openalex.org/I199691007"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9647,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.73215336,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"20","issue":"13","first_page":"2145","last_page":"2147"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.40869998931884766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.40869998931884766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10798","display_name":"Crystallography and molecular interactions","score":0.2379000037908554,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10923","display_name":"Force Microscopy Techniques and Applications","score":0.0625,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6309889554977417},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.560183584690094},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.5240600109100342},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45824193954467773},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.4147071838378906},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3264607787132263},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2795524001121521},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13525694608688354},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11288350820541382}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6309889554977417},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.560183584690094},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.5240600109100342},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45824193954467773},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.4147071838378906},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3264607787132263},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2795524001121521},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13525694608688354},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11288350820541382},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bth203","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth203","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/13/2145/48905874/bioinformatics_20_13_2145.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:15073001","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15073001","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth203","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth203","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/13/2145/48905874/bioinformatics_20_13_2145.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W2012307993","https://openalex.org/W2099254366","https://openalex.org/W2129208766","https://openalex.org/W2130479394","https://openalex.org/W2151550848","https://openalex.org/W2152705200"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2193237397","https://openalex.org/W2084679820","https://openalex.org/W2391644650","https://openalex.org/W2387003094","https://openalex.org/W2150659537","https://openalex.org/W1476194286","https://openalex.org/W2040329887","https://openalex.org/W1993048108","https://openalex.org/W1587346125"],"abstract_inverted_index":{"UNLABELLED:":[0],"Amino":[1],"acid":[2],"contacts":[3,44,51,57],"in":[4,15],"terms":[5],"of":[6,18,21,39,65,68,81,86,114,131,140],"atomic":[7,56],"interactions":[8],"are":[9,138],"essential":[10],"factors":[11],"to":[12],"be":[13],"considered":[14],"the":[16,19,35,69,115,118,128],"analysis":[17],"structure":[20],"a":[22,63],"protein":[23,122],"and":[24,37,46,72,75,93,108,125,136,149,154],"its":[25],"complexes.":[26],"Consequently,":[27],"molecular":[28],"biologists":[29],"do":[30],"require":[31],"specific":[32],"tools":[33],"for":[34],"identification":[36],"visualization":[38],"all":[40],"such":[41],"contacts.":[42],"Graphical":[43,152,156],"(GC)":[45],"interface":[47],"forming":[48],"residue":[49],"graphical":[50],"(IFRgc)":[52],"presented":[53],"here,":[54],"calculate":[55],"among":[58],"amino":[59],"acids":[60],"based":[61],"on":[62],"table":[64],"predefined":[66],"pairs":[67],"atom":[70],"types":[71,90],"their":[73],"distances,":[74],"then":[76],"display":[77],"them":[78],"using":[79],"number":[80],"different":[82,100],"forms.":[83],"The":[84],"inventory":[85],"currently":[87],"listed":[88],"contact":[89],"by":[91],"GC":[92,135],"IFRgc":[94,137],"include":[95],"hydrogen":[96],"bonds":[97],"(in":[98],"nine":[99],"flavors),":[101],"hydrophobic":[102],"interactions,":[103,105,116],"charge-charge":[104],"aromatic":[106],"stacking":[107],"disulfide":[109],"bonds.":[110],"Such":[111],"extensive":[112],"catalog":[113],"representing":[117],"forces":[119],"that":[120],"govern":[121],"folding,":[123],"stability":[124],"binding,":[126],"is":[127],"key":[129],"feature":[130],"these":[132],"two":[133],"applications.":[134],"part":[139],"STING":[141],"Millennium":[142],"Suite.":[143],"AVAILABILITY:":[144],"http://sms.cbi.cnptia.embrapa.br/SMS,":[145],"http://trantor.bioc.columbia.edu/SMS,":[146],"http://mirrors.rcsb.org//SMS,":[147],"http://www.es.embnet.org/SMS":[148],"http://www.ar.embnet.org/SMS":[150],"(Options:":[151],"Contacts":[153],"IFR":[155],"Contacts).":[157]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}