{"id":"https://openalex.org/W2124889025","doi":"https://doi.org/10.1093/bioinformatics/bth146","title":"\u2018Harvester\u2019: a fast meta search engine of human protein resources","display_name":"\u2018Harvester\u2019: a fast meta search engine of human protein resources","publication_year":2004,"publication_date":"2004-02-26","ids":{"openalex":"https://openalex.org/W2124889025","doi":"https://doi.org/10.1093/bioinformatics/bth146","mag":"2124889025","pmid":"https://pubmed.ncbi.nlm.nih.gov/14988114"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth146","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth146","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/12/1962/48905894/bioinformatics_20_12_1962.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/12/1962/48905894/bioinformatics_20_12_1962.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029527657","display_name":"Urban Liebel","orcid":null},"institutions":[{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Urban Liebel","raw_affiliation_strings":["Cell Biology and Cell Biophysics Programme, European Molecular Biology Laboratory, Heidelberg, Germany","Cell Biology and Cell Biophysics Programme#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cell Biology and Cell Biophysics Programme, European Molecular Biology Laboratory, Heidelberg, Germany","institution_ids":["https://openalex.org/I4210138560"]},{"raw_affiliation_string":"Cell Biology and Cell Biophysics Programme#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045578567","display_name":"Bjoern Kindler","orcid":null},"institutions":[{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bjoern Kindler","raw_affiliation_strings":["Computer and Network Group European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, 69117 Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Network Group European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, 69117 Heidelberg, Germany","institution_ids":["https://openalex.org/I4210153543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017298007","display_name":"Rainer Pepperkok","orcid":"https://orcid.org/0000-0002-9762-3583"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rainer Pepperkok","raw_affiliation_strings":["Cell Biology and Cell Biophysics Programme and","Cell Biology and Cell Biophysics Programme#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cell Biology and Cell Biophysics Programme and","institution_ids":[]},{"raw_affiliation_string":"Cell Biology and Cell Biophysics Programme#TAB#","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029527657"],"corresponding_institution_ids":["https://openalex.org/I4210138560"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.1705,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.87087264,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"20","issue":"12","first_page":"1962","last_page":"1963"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.4268999993801117,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.4268999993801117,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.19529999792575836,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.06270000338554382,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7535626292228699},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.6117104291915894},{"id":"https://openalex.org/keywords/database-search-engine","display_name":"Database search engine","score":0.5682962536811829},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4994518756866455},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.424580454826355},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4186702370643616},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3462899923324585}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7535626292228699},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.6117104291915894},{"id":"https://openalex.org/C48000682","wikidata":"https://www.wikidata.org/wiki/Q5227411","display_name":"Database search engine","level":3,"score":0.5682962536811829},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4994518756866455},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.424580454826355},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4186702370643616},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3462899923324585}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bth146","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth146","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/12/1962/48905894/bioinformatics_20_12_1962.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14988114","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14988114","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth146","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth146","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/12/1962/48905894/bioinformatics_20_12_1962.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4922664455","display_name":"Verbundprojekt: Nationales Genomforschungsnetz - Kernbereich, Anteil DKFZ","funder_award_id":"01GR0101","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8743031177","display_name":null,"funder_award_id":"01KW0013","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124889025.pdf","grobid_xml":"https://content.openalex.org/works/W2124889025.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1974092887","https://openalex.org/W2006211612","https://openalex.org/W2099373309","https://openalex.org/W2117919289","https://openalex.org/W2152178770","https://openalex.org/W2163181687","https://openalex.org/W2168507922","https://openalex.org/W2168783124"],"related_works":["https://openalex.org/W1601704076","https://openalex.org/W2119135658","https://openalex.org/W2161902337","https://openalex.org/W2370199378","https://openalex.org/W2368491091","https://openalex.org/W2060088491","https://openalex.org/W2187419685","https://openalex.org/W4233958997","https://openalex.org/W2374021970","https://openalex.org/W2152570188"],"abstract_inverted_index":{"SUMMARY:":[0],"We":[1],"have":[2],"developed":[3],"a":[4,31,36,69,92],"Web-based":[5],"tool":[6],"named":[7],"'Harvester'":[8],"that":[9],"bulk-collects":[10],"bioinformatic":[11],"data":[12],"on":[13,24,30,91,102],"human":[14],"proteins":[15],"from":[16],"various":[17],"databases":[18],"and":[19,41,66,80,88,104],"prediction":[20,89],"servers.":[21],"The":[22,110],"information":[23],"every":[25],"single":[26,32,93],"protein":[27,64],"is":[28,75,112],"assembled":[29],"HTML":[33],"page":[34],"as":[35],"combination":[37],"of":[38,57,84],"database":[39,86,107],"screen-shots":[40],"plain":[42],"text.":[43],"A":[44,95],"full":[45],"text":[46],"meta":[47],"search":[48],"engine,":[49],"similar":[50],"to":[51,78,100,105,115],"Google":[52],"trade":[53],"mark,":[54],"allows":[55,98],"screening":[56],"the":[58,82,116],"whole":[59],"genome":[60],"proteome":[61],"for":[62],"current":[63],"functions":[65],"predictions":[67],"in":[68],"few":[70],"seconds.":[71],"With":[72],"Harvester":[73,103],"it":[74],"now":[76],"possible":[77],"compare":[79],"check":[81],"quality":[83],"different":[85],"entries":[87],"algorithms":[90],"page.":[94],"feedback":[96],"forum":[97],"users":[99],"comment":[101],"report":[106],"inconsistencies.":[108],"AVAILABILITY:":[109],"service":[111],"freely":[113],"available":[114],"academic":[117],"community":[118],"at":[119],"http://harvester.embl.de.":[120]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2025-10-10T00:00:00"}
