{"id":"https://openalex.org/W2101269698","doi":"https://doi.org/10.1093/bioinformatics/bth137","title":"Development of joint application strategies for two microbial gene finders","display_name":"Development of joint application strategies for two microbial gene finders","publication_year":2004,"publication_date":"2004-02-26","ids":{"openalex":"https://openalex.org/W2101269698","doi":"https://doi.org/10.1093/bioinformatics/bth137","mag":"2101269698","pmid":"https://pubmed.ncbi.nlm.nih.gov/14988122"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth137","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/10/1622/48905950/bioinformatics_20_10_1622.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/10/1622/48905950/bioinformatics_20_10_1622.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081103408","display_name":"Alice C. McHardy","orcid":"https://orcid.org/0000-0003-2370-3430"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Alice C. McHardy","raw_affiliation_strings":["Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, Germany","Center for Biotechnology (CeBiTec)#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Center for Biotechnology (CeBiTec)#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088085534","display_name":"Alexander Goesmann","orcid":"https://orcid.org/0000-0002-7086-2568"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alexander Goesmann","raw_affiliation_strings":["Center for Biotechnology (CeBiTec)#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Biotechnology (CeBiTec)#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082682293","display_name":"Alfred P\u00fchler","orcid":"https://orcid.org/0000-0003-4723-2960"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alfred P\u00fchler","raw_affiliation_strings":["Lehrstuhl f\u00fcr Genetik, Department of Biology, Bielefeld University, 33594 Bielefeld, Germany#TAB#"],"affiliations":[{"raw_affiliation_string":"Lehrstuhl f\u00fcr Genetik, Department of Biology, Bielefeld University, 33594 Bielefeld, Germany#TAB#","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086419862","display_name":"Folker Meyer","orcid":"https://orcid.org/0000-0003-1112-2284"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Folker Meyer","raw_affiliation_strings":["Center for Biotechnology (CeBiTec)#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Biotechnology (CeBiTec)#TAB#","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5081103408"],"corresponding_institution_ids":["https://openalex.org/I20121455"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.9235,"has_fulltext":false,"cited_by_count":77,"citation_normalized_percentile":{"value":0.91251285,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"20","issue":"10","first_page":"1622","last_page":"1631"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.733579158782959},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7320971488952637},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6960614323616028},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.6800169944763184},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.596371591091156},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.5662167072296143},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5627273321151733},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5627137422561646},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.510337769985199},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4728710353374481},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4685170650482178},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45055603981018066},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.44600996375083923},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.4159248173236847},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3636338710784912},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3421843945980072},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17303574085235596},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.07519307732582092}],"concepts":[{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.733579158782959},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7320971488952637},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6960614323616028},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.6800169944763184},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.596371591091156},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.5662167072296143},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5627273321151733},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5627137422561646},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.510337769985199},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4728710353374481},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4685170650482178},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45055603981018066},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.44600996375083923},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.4159248173236847},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3636338710784912},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3421843945980072},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17303574085235596},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.07519307732582092},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bth137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth137","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/10/1622/48905950/bioinformatics_20_10_1622.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14988122","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14988122","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth137","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/10/1622/48905950/bioinformatics_20_10_1622.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2101269698.pdf","grobid_xml":"https://content.openalex.org/works/W2101269698.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1809097252","https://openalex.org/W1873623553","https://openalex.org/W1975061104","https://openalex.org/W1990748933","https://openalex.org/W1995661119","https://openalex.org/W2004072996","https://openalex.org/W2026570450","https://openalex.org/W2032870665","https://openalex.org/W2053150867","https://openalex.org/W2057099031","https://openalex.org/W2084787613","https://openalex.org/W2091560728","https://openalex.org/W2106090237","https://openalex.org/W2107432340","https://openalex.org/W2125347557","https://openalex.org/W2127432614","https://openalex.org/W2133253129","https://openalex.org/W2133312664","https://openalex.org/W2143235667","https://openalex.org/W2154478075","https://openalex.org/W2158714788","https://openalex.org/W2164217177","https://openalex.org/W2164926676","https://openalex.org/W2168846269","https://openalex.org/W2170488656","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4388524370","https://openalex.org/W2294108133","https://openalex.org/W2078942911","https://openalex.org/W2059565715","https://openalex.org/W4231584750","https://openalex.org/W2955310315","https://openalex.org/W2101269698","https://openalex.org/W2279845149","https://openalex.org/W3031567038","https://openalex.org/W2024689260"],"abstract_inverted_index":{"The":[0],"methods":[1],"described":[2],"have":[3],"been":[4],"implemented":[5],"within":[6],"the":[7,12],"gene":[8],"prediction":[9],"component":[10],"of":[11],"GenDB":[13],"genome":[14],"annotation":[15],"system.":[16]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":8}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}