{"id":"https://openalex.org/W2103916940","doi":"https://doi.org/10.1093/bioinformatics/bth099","title":"Analysis of disturbed images","display_name":"Analysis of disturbed images","publication_year":2004,"publication_date":"2004-02-12","ids":{"openalex":"https://openalex.org/W2103916940","doi":"https://doi.org/10.1093/bioinformatics/bth099","mag":"2103916940","pmid":"https://pubmed.ncbi.nlm.nih.gov/14962927"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth099","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/9/1381/48905550/bioinformatics_20_9_1381.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/9/1381/48905550/bioinformatics_20_9_1381.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037011542","display_name":"Gerhard Kauer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Gerhard Kauer","raw_affiliation_strings":["Department of Genome Analysis, GBF\u2013German Research Centre for Biotechnology, Mascheroder Weg 1, D-38124 Braunschweig, Germany","Department of Genome Analysis, GBF--German Research Centre for Biotechnology, Mascheroder Weg 1, D-38124 Braunschweig, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Analysis, GBF\u2013German Research Centre for Biotechnology, Mascheroder Weg 1, D-38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I4210124929"]},{"raw_affiliation_string":"Department of Genome Analysis, GBF--German Research Centre for Biotechnology, Mascheroder Weg 1, D-38124 Braunschweig, Germany#TAB#","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000095647","display_name":"Helmut Bl\u00f6cker","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Helmut Bl\u00f6cker","raw_affiliation_strings":["Department of Genome Analysis, GBF\u2013German Research Centre for Biotechnology, Mascheroder Weg 1, D-38124 Braunschweig, Germany","Department of Genome Analysis, GBF--German Research Centre for Biotechnology, Mascheroder Weg 1, D-38124 Braunschweig, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Analysis, GBF\u2013German Research Centre for Biotechnology, Mascheroder Weg 1, D-38124 Braunschweig, Germany","institution_ids":["https://openalex.org/I4210124929"]},{"raw_affiliation_string":"Department of Genome Analysis, GBF--German Research Centre for Biotechnology, Mascheroder Weg 1, D-38124 Braunschweig, Germany#TAB#","institution_ids":["https://openalex.org/I4210124929"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5037011542"],"corresponding_institution_ids":["https://openalex.org/I4210124929"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0876,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.79375817,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"20","issue":"9","first_page":"1381","last_page":"1387"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.31690001487731934,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.31690001487731934,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.1860000044107437,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.08510000258684158,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5578171014785767},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37987926602363586},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3275010883808136}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5578171014785767},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37987926602363586},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3275010883808136}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003116","descriptor_name":"Color","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003124","descriptor_name":"Colorimetry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003124","descriptor_name":"Colorimetry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003124","descriptor_name":"Colorimetry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012815","descriptor_name":"Signal Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012815","descriptor_name":"Signal Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012815","descriptor_name":"Signal Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bth099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth099","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/9/1381/48905550/bioinformatics_20_9_1381.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14962927","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14962927","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth099","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/9/1381/48905550/bioinformatics_20_9_1381.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320330953","display_name":"Projekttr\u00e4ger J\u00fclich","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1513418922","https://openalex.org/W1570513731","https://openalex.org/W1669383326","https://openalex.org/W2003938193","https://openalex.org/W2151047202","https://openalex.org/W2157924997","https://openalex.org/W2163150036","https://openalex.org/W2165133126","https://openalex.org/W3022893215"],"related_works":["https://openalex.org/W2755342338","https://openalex.org/W2058170566","https://openalex.org/W2036807459","https://openalex.org/W2775347418","https://openalex.org/W1969923398","https://openalex.org/W2166024367","https://openalex.org/W2772917594","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2079911747"],"abstract_inverted_index":{"MOTIVATION:":[0],"Images":[1],"in":[2,165],"cellular":[3],"and":[4,19,67,92,147,169],"molecular":[5],"biology":[6],"(from":[7],"microscopy,":[8],"blots,":[9],"biochips,":[10],"etc.)":[11],"are":[12,34,180],"often":[13,52],"disturbed,":[14],"so":[15],"that":[16],"the":[17,22,38,46,58,88,119,142],"detection":[18,168],"analysis":[20,60,89,171],"of":[21,61,90,101,152,172],"respective":[23],"relevant":[24],"geometrical":[25],"objects":[26,143],"may":[27],"be":[28,65,73,145],"difficult":[29],"or":[30,44],"error-prone.":[31],"The":[32,176],"disturbances":[33],"either":[35],"caused":[36],"by":[37,45,113,129],"detector,":[39],"usually":[40],"a":[41,82,108,135],"CCD":[42],"camera,":[43],"experimental":[47],"setup.":[48],"Furthermore,":[49],"microtechnology":[50],"experiments":[51,63],"require":[53],"simultaneous":[54],"multiple-colour":[55],"stainings.":[56],"Therefore,":[57],"image":[59,116],"such":[62],"should":[64,70],"colour-sensitive,":[66],"colour":[68,155,158],"shadings":[69],"not":[71],"only":[72],"detectable":[74],"but":[75],"also":[76],"quantifiable.":[77],"RESULTS:":[78],"Here,":[79],"we":[80,163],"describe":[81],"general":[83],"solution":[84],"as":[85,95,97,111,118,127],"applied":[86],"to":[87,98,105,140,144],"blots":[91],"DNA":[93],"chips":[94],"well":[96],"microscopy":[99],"images":[100],"tissues.":[102],"We":[103],"decided":[104],"use":[106],"(i)":[107],"stochastic":[109],"filter":[110],"used":[112],"Wiener":[114],"for":[115,122,131,157],"segmentation":[117],"starting":[120],"point":[121],"object":[123,132],"detection,":[124],"(ii)":[125],"chaincodes":[126],"described":[128],"Freeman":[130],"description,":[133],"(iii)":[134],"novel":[136],"'rolling":[137],"disc":[138],"algorithm'":[139],"spot":[141],"analysed":[146],"(iv)":[148],"an":[149,153],"HSI":[150],"instead":[151],"RGB":[154],"model":[156],"analysis.":[159],"With":[160],"this":[161],"combination":[162],"succeeded":[164],"performing":[166],"shape":[167],"colour-based":[170],"disturbed":[173],"images.":[174],"AVAILABILITY:":[175],"corresponding":[177],"modules":[178],"(C++)":[179],"available":[181],"on":[182],"request.":[183]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
