{"id":"https://openalex.org/W2107694985","doi":"https://doi.org/10.1093/bioinformatics/bth058","title":"Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus","display_name":"Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus","publication_year":2004,"publication_date":"2004-02-05","ids":{"openalex":"https://openalex.org/W2107694985","doi":"https://doi.org/10.1093/bioinformatics/bth058","mag":"2107694985","pmid":"https://pubmed.ncbi.nlm.nih.gov/14764557"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth058","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1157/48905373/bioinformatics_20_7_1157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1157/48905373/bioinformatics_20_7_1157.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033118239","display_name":"Volker Brendel","orcid":"https://orcid.org/0000-0002-8055-7508"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I4210118410","display_name":"Institut th\u00e9matique G\u00e9n\u00e9tique, g\u00e9nomique et bioinformatique","ror":"https://ror.org/01rfstj90","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210118410"]}],"countries":["FR","US"],"is_corresponding":true,"raw_author_name":"Volker Brendel","raw_affiliation_strings":["Department of Genetics, Development and Cell Biology, Iowa State University, 2112 Molecular Biology Building, Ames, IA 50011-3260, USA. vbrendel@iastate.edu","Department of Genetics, Development and Cell Biology#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Development and Cell Biology, Iowa State University, 2112 Molecular Biology Building, Ames, IA 50011-3260, USA. vbrendel@iastate.edu","institution_ids":["https://openalex.org/I173911158"]},{"raw_affiliation_string":"Department of Genetics, Development and Cell Biology#TAB#","institution_ids":["https://openalex.org/I4210118410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020584420","display_name":"Liqun Xing","orcid":"https://orcid.org/0000-0001-9505-7330"},"institutions":[{"id":"https://openalex.org/I4210118410","display_name":"Institut th\u00e9matique G\u00e9n\u00e9tique, g\u00e9nomique et bioinformatique","ror":"https://ror.org/01rfstj90","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210118410"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Liqun Xing","raw_affiliation_strings":["Department of Genetics, Development and Cell Biology#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Development and Cell Biology#TAB#","institution_ids":["https://openalex.org/I4210118410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100649025","display_name":"Wei Zhu","orcid":"https://orcid.org/0000-0003-1459-6733"},"institutions":[{"id":"https://openalex.org/I4210118410","display_name":"Institut th\u00e9matique G\u00e9n\u00e9tique, g\u00e9nomique et bioinformatique","ror":"https://ror.org/01rfstj90","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210118410"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Wei Zhu","raw_affiliation_strings":["Department of Genetics, Development and Cell Biology#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Development and Cell Biology#TAB#","institution_ids":["https://openalex.org/I4210118410"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5033118239"],"corresponding_institution_ids":["https://openalex.org/I173911158","https://openalex.org/I4210118410"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.6282,"has_fulltext":false,"cited_by_count":105,"citation_normalized_percentile":{"value":0.96941379,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"20","issue":"7","first_page":"1157","last_page":"1169"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/expressed-sequence-tag","display_name":"Expressed sequence tag","score":0.7644970417022705},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6851050853729248},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.6136207580566406},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.6117752194404602},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5771260261535645},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5672641396522522},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5656774044036865},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.55954909324646},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5526524186134338},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5090822577476501},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.451521098613739},{"id":"https://openalex.org/keywords/locus","display_name":"Locus (genetics)","score":0.4373367428779602}],"concepts":[{"id":"https://openalex.org/C149034497","wikidata":"https://www.wikidata.org/wiki/Q1384835","display_name":"Expressed sequence tag","level":4,"score":0.7644970417022705},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6851050853729248},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.6136207580566406},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.6117752194404602},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5771260261535645},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5672641396522522},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5656774044036865},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.55954909324646},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5526524186134338},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5090822577476501},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.451521098613739},{"id":"https://openalex.org/C84597430","wikidata":"https://www.wikidata.org/wiki/Q106227","display_name":"Locus (genetics)","level":3,"score":0.4373367428779602}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004274","descriptor_name":"DNA, Recombinant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004274","descriptor_name":"DNA, Recombinant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004274","descriptor_name":"DNA, Recombinant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bth058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth058","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1157/48905373/bioinformatics_20_7_1157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14764557","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14764557","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth058","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1157/48905373/bioinformatics_20_7_1157.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6299999952316284,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2107694985.pdf","grobid_xml":"https://content.openalex.org/works/W2107694985.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1749816123","https://openalex.org/W1839674003","https://openalex.org/W1956576553","https://openalex.org/W1974365473","https://openalex.org/W1978156257","https://openalex.org/W1990061958","https://openalex.org/W1995886164","https://openalex.org/W2006368694","https://openalex.org/W2013340095","https://openalex.org/W2014181394","https://openalex.org/W2015292449","https://openalex.org/W2019573310","https://openalex.org/W2020240988","https://openalex.org/W2030660517","https://openalex.org/W2041956242","https://openalex.org/W2045510682","https://openalex.org/W2077689651","https://openalex.org/W2087297724","https://openalex.org/W2095891619","https://openalex.org/W2101972919","https://openalex.org/W2104189907","https://openalex.org/W2110400205","https://openalex.org/W2112240593","https://openalex.org/W2118784262","https://openalex.org/W2126598626","https://openalex.org/W2128620199","https://openalex.org/W2136145671","https://openalex.org/W2136466390","https://openalex.org/W2137986897","https://openalex.org/W2139455449","https://openalex.org/W2141165178","https://openalex.org/W2144885757","https://openalex.org/W2144921226","https://openalex.org/W2147489306","https://openalex.org/W2149238618","https://openalex.org/W2151308110","https://openalex.org/W2154269509","https://openalex.org/W2154312618","https://openalex.org/W2158714788","https://openalex.org/W2158874082","https://openalex.org/W2159833474","https://openalex.org/W2160335614","https://openalex.org/W2166960413"],"related_works":["https://openalex.org/W1999129612","https://openalex.org/W2162782320","https://openalex.org/W2009940763","https://openalex.org/W3111061871","https://openalex.org/W1760213857","https://openalex.org/W2059565715","https://openalex.org/W110079389","https://openalex.org/W2099626126","https://openalex.org/W2043778888","https://openalex.org/W45826765"],"abstract_inverted_index":{"The":[0,29],"source":[1],"code":[2],"is":[3,35,45],"available":[4,46],"for":[5,11],"download":[6],"at":[7,19,47],"http://bioinformatics.iastate.edu/bioinformatics2go/gs/download.html.":[8],"Web":[9],"servers":[10],"Arabidopsis":[12],"and":[13,21],"other":[14],"plant":[15],"species":[16],"are":[17],"accessible":[18],"http://www.plantgdb.org/cgi-bin/AtGeneSeqer.cgi":[20],"http://www.plantgdb.org/cgi-bin/GeneSeqer.cgi,":[22],"respectively.":[23],"For":[24],"non-plant":[25],"species,":[26],"use":[27],"http://bioinformatics.iastate.edu/cgi-bin/gs.cgi.":[28],"splice":[30],"site":[31],"prediction":[32],"tool":[33],"(SplicePredictor)":[34],"distributed":[36],"with":[37],"the":[38],"GeneSeqer":[39],"code.":[40],"A":[41],"SplicePredictor":[42],"web":[43],"server":[44],"http://bioinformatics.iastate.edu/cgi-bin/sp.cgi":[48]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":4}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}