{"id":"https://openalex.org/W2126371626","doi":"https://doi.org/10.1093/bioinformatics/bth046","title":"Exploring genome architecture through GOV: a WWW-based gene order visualizer","display_name":"Exploring genome architecture through GOV: a WWW-based gene order visualizer","publication_year":2004,"publication_date":"2004-02-05","ids":{"openalex":"https://openalex.org/W2126371626","doi":"https://doi.org/10.1093/bioinformatics/bth046","mag":"2126371626","pmid":"https://pubmed.ncbi.nlm.nih.gov/14764545"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth046","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/6/984/48905299/bioinformatics_20_6_984.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/6/984/48905299/bioinformatics_20_6_984.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113170523","display_name":"Kishore R. Sakharkar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Kishore R. Sakharkar","raw_affiliation_strings":["BioInformatics Institute, Biopolis street, Singapore 138671. kishore@bii.a-star.edu.sg","BioInformatics Institute, Biopolis street, Singapore 138671#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioInformatics Institute, Biopolis street, Singapore 138671. kishore@bii.a-star.edu.sg","institution_ids":["https://openalex.org/I4210148498"]},{"raw_affiliation_string":"BioInformatics Institute, Biopolis street, Singapore 138671#TAB#","institution_ids":["https://openalex.org/I4210148498"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026787939","display_name":"Vincent Chow","orcid":"https://orcid.org/0000-0003-2634-6213"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Vincent T. K. Chow","raw_affiliation_strings":["Human Genome Laboratory, Department of Microbiology, Faculty of Medicine, National University of Singapore, Kent Ridge, Singapore 117597"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Genome Laboratory, Department of Microbiology, Faculty of Medicine, National University of Singapore, Kent Ridge, Singapore 117597","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5113170523"],"corresponding_institution_ids":["https://openalex.org/I4210148498"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.479,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.62593461,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"20","issue":"6","first_page":"984","last_page":"985"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.662506103515625},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.602725625038147},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.47184422612190247},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.46687811613082886},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4224890470504761},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40113306045532227},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.306998610496521},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2192060947418213},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.1290041208267212}],"concepts":[{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.662506103515625},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.602725625038147},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47184422612190247},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.46687811613082886},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4224890470504761},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40113306045532227},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.306998610496521},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2192060947418213},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.1290041208267212},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/bth046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth046","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/6/984/48905299/bioinformatics_20_6_984.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14764545","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14764545","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/107675","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/107675","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/132547","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/132547","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth046","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/6/984/48905299/bioinformatics_20_6_984.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2126371626.pdf","grobid_xml":"https://content.openalex.org/works/W2126371626.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W207833169","https://openalex.org/W1578104218","https://openalex.org/W1598176384","https://openalex.org/W2018092436","https://openalex.org/W2018562554","https://openalex.org/W2036847531","https://openalex.org/W2045240688","https://openalex.org/W2049483248","https://openalex.org/W2049783361","https://openalex.org/W2053231139","https://openalex.org/W2080419472","https://openalex.org/W2111220881","https://openalex.org/W2128897400","https://openalex.org/W2161237846","https://openalex.org/W2167770444"],"related_works":["https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W3178279768","https://openalex.org/W193851735","https://openalex.org/W2588198209","https://openalex.org/W2773861473","https://openalex.org/W2987420353","https://openalex.org/W1491897707"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,104],"past":[2],"decade":[3],"has":[4],"seen":[5],"extension":[6],"in":[7,93,136],"the":[8,110,114,134],"methods":[9],"of":[10,36,78,96,109,113,116,133],"sequence":[11,112],"analysis":[12,120],"from":[13,81],"single":[14],"gene":[15,79,94,115,129,135],"based":[16],"to":[17,48,53,125],"analyzing":[18],"multiple":[19,97],"genes":[20],"and":[21,57,76,83,91,102,118,131],"proteins":[22],"simultaneously.":[23],"Consequently,":[24],"there":[25],"is":[26,47,72],"a":[27,54],"need":[28],"for":[29,74],"software":[30,62],"tools":[31],"that":[32],"will":[33],"allow":[34],"mining":[35],"these":[37],"enormous":[38],"datasets":[39],"at":[40,123],"genome":[41,86],"level":[42],"effectively.":[43],"A":[44,67],"key":[45],"challenge":[46],"make":[49],"them":[50],"user-friendly,":[51],"available":[52],"larger":[55],"community":[56],"integrate":[58],"with":[59],"public":[60],"domain":[61],"without":[63],"much":[64],"hassle.":[65],"RESULTS:":[66],"web-based":[68],"interactive":[69],"computational":[70],"tool":[71],"described":[73],"visualization":[75],"comparison":[77],"order":[80,95],"prokaryotic":[82],"selected":[84],"viral":[85],"data.":[87],"Many":[88],"intriguing":[89],"similarities":[90],"differences":[92],"genomes":[98],"can":[99],"be":[100],"compared":[101],"revealed.":[103],"interface":[105],"facilitates":[106],"easy":[107],"extraction":[108],"nucleotide":[111],"interest":[117],"BLAST":[119],"against":[121],"GenBank":[122],"NCBI":[124],"provide":[126],"insights":[127],"into":[128],"functions":[130],"orthologs":[132],"other":[137],"species.":[138]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
