{"id":"https://openalex.org/W2122429432","doi":"https://doi.org/10.1093/bioinformatics/bth044","title":"Large-scale assessment of the utility of low-resolution protein structures for biochemical function assignment","display_name":"Large-scale assessment of the utility of low-resolution protein structures for biochemical function assignment","publication_year":2004,"publication_date":"2004-02-05","ids":{"openalex":"https://openalex.org/W2122429432","doi":"https://doi.org/10.1093/bioinformatics/bth044","mag":"2122429432","pmid":"https://pubmed.ncbi.nlm.nih.gov/14764543"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth044","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1087/48905241/bioinformatics_20_7_1087.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1087/48905241/bioinformatics_20_7_1087.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113682430","display_name":"Adri\u00e1n K. Arakaki","orcid":null},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Adrian K. Arakaki","raw_affiliation_strings":["Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203\u20131199, USA","Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203--1199, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203\u20131199, USA","institution_ids":["https://openalex.org/I63190737"]},{"raw_affiliation_string":"Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203--1199, USA#TAB#","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100354659","display_name":"Yang Zhang","orcid":"https://orcid.org/0000-0002-2739-1916"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yang Zhang","raw_affiliation_strings":["Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203\u20131199, USA","Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203--1199, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203\u20131199, USA","institution_ids":["https://openalex.org/I63190737"]},{"raw_affiliation_string":"Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203--1199, USA#TAB#","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010808261","display_name":"Jeffrey Skolnick","orcid":"https://orcid.org/0000-0002-1877-4958"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey Skolnick","raw_affiliation_strings":["Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203\u20131199, USA","Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203--1199, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203\u20131199, USA","institution_ids":["https://openalex.org/I63190737"]},{"raw_affiliation_string":"Center of Excellence in Bioinformatics, University at Buffalo, 901 Washington St, Buffalo, NY 14203--1199, USA#TAB#","institution_ids":["https://openalex.org/I63190737"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5113682430"],"corresponding_institution_ids":["https://openalex.org/I63190737"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5894,"has_fulltext":true,"cited_by_count":57,"citation_normalized_percentile":{"value":0.81972949,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"7","first_page":"1087","last_page":"1096"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.746399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.746399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.13750000298023224,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.061799999326467514,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5855293869972229},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5700242519378662},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.5422036051750183},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5311381220817566},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3611051142215729},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24135664105415344},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1816917359828949},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06661024689674377},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.06605303287506104},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.058497220277786255}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5855293869972229},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5700242519378662},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.5422036051750183},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5311381220817566},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3611051142215729},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24135664105415344},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1816917359828949},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06661024689674377},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.06605303287506104},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.058497220277786255}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/bth044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth044","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1087/48905241/bioinformatics_20_7_1087.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14764543","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14764543","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1010.6044","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1010.6044","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2004/02/05/bioinformatics.bth044.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth044","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1087/48905241/bioinformatics_20_7_1087.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3529838319","display_name":null,"funder_award_id":"GM-48835","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G714419567","display_name":"Interaction Pattern Based Predictor of Protein Strutures","funder_award_id":"2r01gm048835-20a1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2122429432.pdf","grobid_xml":"https://content.openalex.org/works/W2122429432.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W217834111","https://openalex.org/W1491176290","https://openalex.org/W1503558940","https://openalex.org/W1509280691","https://openalex.org/W1600613454","https://openalex.org/W1969738839","https://openalex.org/W1975763169","https://openalex.org/W1986899584","https://openalex.org/W1986969007","https://openalex.org/W1992115216","https://openalex.org/W1999119971","https://openalex.org/W2003788979","https://openalex.org/W2020038526","https://openalex.org/W2020153916","https://openalex.org/W2032838501","https://openalex.org/W2038606051","https://openalex.org/W2043886357","https://openalex.org/W2045119694","https://openalex.org/W2051895548","https://openalex.org/W2052112948","https://openalex.org/W2079061800","https://openalex.org/W2081920176","https://openalex.org/W2085277871","https://openalex.org/W2087705075","https://openalex.org/W2095855913","https://openalex.org/W2099435674","https://openalex.org/W2100320834","https://openalex.org/W2103017472","https://openalex.org/W2103150692","https://openalex.org/W2107910985","https://openalex.org/W2108067237","https://openalex.org/W2112615307","https://openalex.org/W2113993025","https://openalex.org/W2115595474","https://openalex.org/W2116901406","https://openalex.org/W2117164735","https://openalex.org/W2123858481","https://openalex.org/W2124931735","https://openalex.org/W2139281871","https://openalex.org/W2141885858","https://openalex.org/W2143011057","https://openalex.org/W2151600636","https://openalex.org/W2155367844","https://openalex.org/W2573642578","https://openalex.org/W4210531204","https://openalex.org/W4231182729","https://openalex.org/W4236463097","https://openalex.org/W4245845489","https://openalex.org/W4246723235"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"MOTIVATION:":[0],"Several":[1],"protein":[2,146],"function":[3],"prediction":[4,59,148],"methods":[5,19],"employ":[6],"structural":[7,78],"features":[8],"captured":[9],"in":[10,31,68,122],"three-dimensional":[11],"(3D)":[12],"descriptors":[13,55],"of":[14,52,60,103,113,143],"biologically":[15],"relevant":[16],"sites.":[17],"These":[18],"are":[20],"successful":[21],"when":[22],"applied":[23],"to":[24,95],"high-resolution":[25],"structures,":[26,115],"but":[27],"their":[28],"detection":[29],"ability":[30],"lower":[32],"resolution":[33],"predicted":[34,96],"structures":[35,97],"has":[36,85],"only":[37],"been":[38,86],"tested":[39],"for":[40,56,70],"a":[41,50,136],"few":[42],"cases.":[43],"RESULTS:":[44],"A":[45,126],"method":[46,117],"that":[47,138],"automatically":[48,80],"generates":[49],"library":[51],"3D":[53],"functional":[54,65,76],"the":[57,119,133,144],"structure-based":[58],"enzyme":[61,108],"active":[62,120],"sites":[63],"(automated":[64],"templates,":[66],"593":[67],"total":[69],"162":[71],"different":[72],"enzymes),":[73],"based":[74],"on":[75],"and":[77,88],"information":[79],"extracted":[81],"from":[82,107,132],"public":[83],"databases,":[84],"developed":[87],"evaluated":[89],"using":[90,141],"decoy":[91,114],"structures.":[92,110],"The":[93],"applicability":[94],"was":[98],"investigated":[99],"by":[100],"analyzing":[101],"decoys":[102],"varying":[104],"quality,":[105],"derived":[106],"native":[109,134],"For":[111],"35%":[112],"our":[116],"identifies":[118],"site":[121],"models":[123],"having":[124],"3-4":[125],"coordinate":[127],"root":[128],"mean":[129],"square":[130],"deviation":[131],"structure,":[135],"quality":[137],"is":[139],"reachable":[140],"state":[142],"art":[145],"structure":[147],"algorithms.":[149],"AVAILABILITY:":[150],"See":[151],"http://www.bioinformatics.buffalo.edu/resources/aft/":[152]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":7}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
