{"id":"https://openalex.org/W2106716466","doi":"https://doi.org/10.1093/bioinformatics/bth035","title":"Genes@Work: an efficient algorithm for pattern discovery and multivariate feature selection in gene expression data","display_name":"Genes@Work: an efficient algorithm for pattern discovery and multivariate feature selection in gene expression data","publication_year":2004,"publication_date":"2004-02-05","ids":{"openalex":"https://openalex.org/W2106716466","doi":"https://doi.org/10.1093/bioinformatics/bth035","mag":"2106716466","pmid":"https://pubmed.ncbi.nlm.nih.gov/14764572"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/bth035","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth035","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1033/48905287/bioinformatics_20_7_1033.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1033/48905287/bioinformatics_20_7_1033.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058831591","display_name":"Jorge Lepre","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jorge Lepre","raw_affiliation_strings":["IBM T.J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","IBM T. J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA"],"affiliations":[{"raw_affiliation_string":"IBM T.J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","institution_ids":[]},{"raw_affiliation_string":"IBM T. J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031395616","display_name":"John Jeremy Rice","orcid":"https://orcid.org/0000-0001-8280-8529"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. Jeremy Rice","raw_affiliation_strings":["IBM T.J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","IBM T. J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA"],"affiliations":[{"raw_affiliation_string":"IBM T.J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","institution_ids":[]},{"raw_affiliation_string":"IBM T. J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101587306","display_name":"Yuhai Tu","orcid":"https://orcid.org/0000-0002-4589-981X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yuhai Tu","raw_affiliation_strings":["IBM T.J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","IBM T. J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA"],"affiliations":[{"raw_affiliation_string":"IBM T.J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","institution_ids":[]},{"raw_affiliation_string":"IBM T. J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000065699","display_name":"Gustavo Stolovitzky","orcid":"https://orcid.org/0000-0002-9618-2819"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gustavo Stolovitzky","raw_affiliation_strings":["IBM T.J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","IBM T. J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA"],"affiliations":[{"raw_affiliation_string":"IBM T.J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","institution_ids":[]},{"raw_affiliation_string":"IBM T. J. Watson Research Center, P.O. Box 218, Yorktown Heights, NY 10598, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5058831591"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.3914,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.92981775,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"20","issue":"7","first_page":"1033","last_page":"1044"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.923799991607666,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multivariate-statistics","display_name":"Multivariate statistics","score":0.670907735824585},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5715148448944092},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.5348480939865112},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5296221375465393},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5267683267593384},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4724971354007721},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.472255140542984},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4662918448448181},{"id":"https://openalex.org/keywords/multivariate-analysis","display_name":"Multivariate analysis","score":0.4482080936431885},{"id":"https://openalex.org/keywords/enumeration","display_name":"Enumeration","score":0.42979252338409424},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.41307318210601807},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3592032194137573},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.343672513961792},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28260689973831177},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2218293845653534},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.19738039374351501},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17846307158470154},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15756753087043762}],"concepts":[{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.670907735824585},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5715148448944092},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.5348480939865112},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5296221375465393},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5267683267593384},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4724971354007721},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.472255140542984},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4662918448448181},{"id":"https://openalex.org/C38180746","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate analysis","level":2,"score":0.4482080936431885},{"id":"https://openalex.org/C156340839","wikidata":"https://www.wikidata.org/wiki/Q2704791","display_name":"Enumeration","level":2,"score":0.42979252338409424},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.41307318210601807},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3592032194137573},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.343672513961792},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28260689973831177},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2218293845653534},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.19738039374351501},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17846307158470154},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15756753087043762},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008223","descriptor_name":"Lymphoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008223","descriptor_name":"Lymphoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008223","descriptor_name":"Lymphoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/bth035","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth035","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1033/48905287/bioinformatics_20_7_1033.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14764572","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14764572","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/bth035","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/bth035","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/7/1033/48905287/bioinformatics_20_7_1033.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2106716466.pdf","grobid_xml":"https://content.openalex.org/works/W2106716466.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1482401268","https://openalex.org/W1493217831","https://openalex.org/W1506285740","https://openalex.org/W1516680908","https://openalex.org/W1593486402","https://openalex.org/W1967053372","https://openalex.org/W1989076816","https://openalex.org/W1992242907","https://openalex.org/W1993146753","https://openalex.org/W2027800464","https://openalex.org/W2028903194","https://openalex.org/W2064208261","https://openalex.org/W2080278541","https://openalex.org/W2087684630","https://openalex.org/W2102794349","https://openalex.org/W2104235597","https://openalex.org/W2105260718","https://openalex.org/W2108728387","https://openalex.org/W2109363337","https://openalex.org/W2110489138","https://openalex.org/W2130494035","https://openalex.org/W2136107412","https://openalex.org/W2139291748","https://openalex.org/W2143426320","https://openalex.org/W2144792853","https://openalex.org/W2150926065","https://openalex.org/W2166086559","https://openalex.org/W2167681720","https://openalex.org/W2171936986","https://openalex.org/W2172230584","https://openalex.org/W2182468807","https://openalex.org/W2336183819","https://openalex.org/W2752885492","https://openalex.org/W3145128584","https://openalex.org/W4238576781","https://openalex.org/W4241400564","https://openalex.org/W4247420482","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2406638334","https://openalex.org/W40745829","https://openalex.org/W1978357124","https://openalex.org/W1578824628","https://openalex.org/W2032728545","https://openalex.org/W1570805059","https://openalex.org/W4250754046","https://openalex.org/W4318262572","https://openalex.org/W2036849593","https://openalex.org/W1978174651"],"abstract_inverted_index":{"Our":[0],"set":[1],"of":[2],"pattern":[3],"discovery":[4],"algorithms":[5],"including":[6],"a":[7,13],"user":[8],"interface":[9],"is":[10,19],"distributed":[11],"as":[12],"package":[14,18],"called":[15],"Genes@Work.":[16],"This":[17],"freely":[20],"available":[21],"to":[22],"non-commercial":[23],"users":[24],"and":[25],"can":[26],"be":[27],"downloaded":[28],"from":[29],"our":[30],"website":[31],"(http://www.research.ibm.com/FunGen).":[32]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
