{"id":"https://openalex.org/W2111033589","doi":"https://doi.org/10.1093/bioinformatics/btg487","title":"Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays","display_name":"Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays","publication_year":2004,"publication_date":"2004-01-29","ids":{"openalex":"https://openalex.org/W2111033589","doi":"https://doi.org/10.1093/bioinformatics/btg487","mag":"2111033589","pmid":"https://pubmed.ncbi.nlm.nih.gov/14751998"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg487","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/6/839/48905169/bioinformatics_20_6_839.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/6/839/48905169/bioinformatics_20_6_839.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040287362","display_name":"Yoseph Barash","orcid":"https://orcid.org/0000-0003-3005-5048"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Yoseph Barash","raw_affiliation_strings":["School of Computer Science and Engineering, Hebrew University, Jerusalem, 91904, Israel","School of Computer Science and Engineering, Hebrew University, Jerusalem 91904, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Hebrew University, Jerusalem, 91904, Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Hebrew University, Jerusalem 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056221807","display_name":"Elinor Dehan","orcid":null},"institutions":[{"id":"https://openalex.org/I2799810450","display_name":"Sheba Medical Center","ror":"https://ror.org/020rzx487","country_code":"IL","type":"healthcare","lineage":["https://openalex.org/I2799810450"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Elinor Dehan","raw_affiliation_strings":["Genomic Research Center, Functional Genomics Unit, Sheba Medical Center, Tel Hashomer, 52620, Israel,","Genomic Research Center, Functional Genomics Unit, Sheba Medical Center, Tel Hashomer, 52620, Israel,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomic Research Center, Functional Genomics Unit, Sheba Medical Center, Tel Hashomer, 52620, Israel,","institution_ids":["https://openalex.org/I2799810450"]},{"raw_affiliation_string":"Genomic Research Center, Functional Genomics Unit, Sheba Medical Center, Tel Hashomer, 52620, Israel,#TAB#","institution_ids":["https://openalex.org/I2799810450"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068929871","display_name":"Meir Krupsky","orcid":"https://orcid.org/0000-0003-3215-7080"},"institutions":[{"id":"https://openalex.org/I2799810450","display_name":"Sheba Medical Center","ror":"https://ror.org/020rzx487","country_code":"IL","type":"healthcare","lineage":["https://openalex.org/I2799810450"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Meir Krupsky","raw_affiliation_strings":["Genomic Research Center, Functional Genomics Unit, Sheba Medical Center, Tel Hashomer, 52620, Israel,","Genomic Research Center, Functional Genomics Unit, Sheba Medical Center, Tel Hashomer, 52620, Israel,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomic Research Center, Functional Genomics Unit, Sheba Medical Center, Tel Hashomer, 52620, Israel,","institution_ids":["https://openalex.org/I2799810450"]},{"raw_affiliation_string":"Genomic Research Center, Functional Genomics Unit, Sheba Medical Center, Tel Hashomer, 52620, Israel,#TAB#","institution_ids":["https://openalex.org/I2799810450"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109210308","display_name":"Wilbur A. Franklin","orcid":null},"institutions":[{"id":"https://openalex.org/I1288162130","display_name":"University of Colorado Hospital","ror":"https://ror.org/006jjmw19","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288162130","https://openalex.org/I4210087413"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wilbur Franklin","raw_affiliation_strings":["Health Science Center, University of Colorado, Denver, CO 80262, USA and","Health Science Center, University of Colorado, Denver, CO 80262, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Science Center, University of Colorado, Denver, CO 80262, USA and","institution_ids":["https://openalex.org/I1288162130","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Health Science Center, University of Colorado, Denver, CO 80262, USA#TAB#","institution_ids":["https://openalex.org/I1288162130","https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021330218","display_name":"Marc Geraci","orcid":null},"institutions":[{"id":"https://openalex.org/I1288162130","display_name":"University of Colorado Hospital","ror":"https://ror.org/006jjmw19","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288162130","https://openalex.org/I4210087413"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc Geraci","raw_affiliation_strings":["Health Science Center, University of Colorado, Denver, CO 80262, USA and","Health Science Center, University of Colorado, Denver, CO 80262, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Science Center, University of Colorado, Denver, CO 80262, USA and","institution_ids":["https://openalex.org/I1288162130","https://openalex.org/I921990950"]},{"raw_affiliation_string":"Health Science Center, University of Colorado, Denver, CO 80262, USA#TAB#","institution_ids":["https://openalex.org/I1288162130","https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076999649","display_name":"Nir Friedman","orcid":"https://orcid.org/0000-0002-9678-3550"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Nir Friedman","raw_affiliation_strings":["School of Computer Science and Engineering, Hebrew University, Jerusalem, 91904, Israel,","School of Computer Science and Engineering, Hebrew University, Jerusalem 91904, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Hebrew University, Jerusalem, 91904, Israel,","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Hebrew University, Jerusalem 91904, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088823841","display_name":"Naftali Kaminski","orcid":"https://orcid.org/0000-0001-5917-4601"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Naftali Kaminski","raw_affiliation_strings":["Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA","Division of Pulmonary, Allergy & Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh PA 15213, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Division of Pulmonary, Allergy & Critical Care Medicine, University of Pittsburgh School of Medicine, Pittsburgh PA 15213, USA","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5040287362"],"corresponding_institution_ids":["https://openalex.org/I197251160"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.3885,"has_fulltext":true,"cited_by_count":92,"citation_normalized_percentile":{"value":0.96673694,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"20","issue":"6","first_page":"839","last_page":"846"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.001500000013038516,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.0013000000035390258,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6963194012641907},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.642956554889679},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.625464916229248},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5493743419647217},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.46547219157218933},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.44891342520713806},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4415780007839203},{"id":"https://openalex.org/keywords/signal","display_name":"SIGNAL (programming language)","score":0.41325700283050537},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21440601348876953},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20918869972229004},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18445929884910583},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1267772912979126},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11406630277633667}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6963194012641907},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.642956554889679},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.625464916229248},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5493743419647217},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.46547219157218933},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.44891342520713806},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4415780007839203},{"id":"https://openalex.org/C2779843651","wikidata":"https://www.wikidata.org/wiki/Q7390335","display_name":"SIGNAL (programming language)","level":2,"score":0.41325700283050537},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21440601348876953},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20918869972229004},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18445929884910583},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1267772912979126},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11406630277633667},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012986","descriptor_name":"Software Validation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btg487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg487","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/6/839/48905169/bioinformatics_20_6_839.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14751998","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14751998","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg487","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/6/839/48905169/bioinformatics_20_6_839.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310174","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2111033589.pdf","grobid_xml":"https://content.openalex.org/works/W2111033589.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W190205155","https://openalex.org/W285471286","https://openalex.org/W1966532209","https://openalex.org/W2038437697","https://openalex.org/W2056541273","https://openalex.org/W2071650644","https://openalex.org/W2093017030","https://openalex.org/W2099111195","https://openalex.org/W2099135975","https://openalex.org/W2109972881","https://openalex.org/W2133111499","https://openalex.org/W2165011536","https://openalex.org/W2587628976","https://openalex.org/W2751221664","https://openalex.org/W3145640181","https://openalex.org/W3150555252","https://openalex.org/W4249966633"],"related_works":["https://openalex.org/W1495042958","https://openalex.org/W2494338568","https://openalex.org/W2122678784","https://openalex.org/W2282510344","https://openalex.org/W139987158","https://openalex.org/W2183994405","https://openalex.org/W4234013965","https://openalex.org/W2349023125","https://openalex.org/W4253006236","https://openalex.org/W1976807322"],"abstract_inverted_index":{"MOTIVATION:":[0],"Recent":[1],"years'":[2],"exponential":[3],"increase":[4],"in":[5,128,251],"DNA":[6],"microarrays":[7],"experiments":[8],"has":[9],"motivated":[10],"the":[11,25,100,107,122,142,147,156,159,162,166,192,196,200,204,209,232,239,262],"development":[12],"of":[13,35,102,118,124,130,149,158,168,194,218,238,253,261],"many":[14],"signal":[15,85,131,163,254],"quantitation":[16,86],"(SQ)":[17],"algorithms.":[18],"These":[19],"algorithms":[20,68,87,105,186],"perform":[21],"various":[22,173],"transformations":[23],"on":[24,106,161,213],"actual":[26],"measurements":[27],"aimed":[28],"to":[29,32,57,63,95,98,120,132,145,203,245,255],"enable":[30,96],"researchers":[31,97],"compare":[33,64,99,191],"readings":[34],"different":[36,84,103],"genes":[37,171,240],"quantitatively":[38],"within":[39,141],"one":[40],"experiment":[41],"and":[42,65,199,229],"across":[43],"separate":[44],"experiments.":[45],"However,":[46],"it":[47],"is":[48,53,69,94,226,243],"relatively":[49],"unclear":[50],"whether":[51],"there":[52],"a":[54,80,150,214],"'best'":[55],"algorithm":[56,127,153],"quantitate":[58],"microarray":[59],"data.":[60,91],"The":[61],"ability":[62],"assess":[66,121,136],"such":[67],"crucial":[70],"for":[71,82,88,187,235,257],"any":[72],"downstream":[73],"analysis.":[74],"In":[75],"this":[76],"work,":[77],"we":[78,138,164],"suggest":[79],"methodology":[81],"comparing":[83],"gene":[89],"expression":[90],"Our":[92,221],"aim":[93],"effect":[101,123,157],"SQ":[104,126,152,160,185],"specific":[108],"dataset":[109,144,215],"they":[110],"are":[111],"dealing":[112],"with.":[113],"We":[114,178,190],"combine":[115],"two":[116],"kinds":[117],"tests":[119],"an":[125,247],"terms":[129,252],"noise":[133],"ratio.":[134],"To":[135],"noise,":[137,256],"exploit":[139],"redundancy":[140],"experimental":[143],"test":[146],"variability":[148],"given":[151],"output.":[154],"For":[155],"evaluate":[165],"overabundance":[167],"differentially":[169],"expressed":[170],"using":[172,195,208],"statistical":[174],"significance":[175],"tests.":[176],"RESULTS:":[177],"demonstrate":[179],"our":[180],"analysis":[181,222],"approach":[182],"with":[183],"three":[184],"oligonucleotide":[188],"microarrays.":[189],"results":[193],"dChip":[197,225],"software":[198,202],"RMAExpress":[201,242],"ones":[205],"obtained":[206],"by":[207],"standard":[210],"Affymetrix":[211],"MAS5":[212,233],"containing":[216],"pairs":[217],"repeated":[219],"hybridizations.":[220],"suggests":[223],"that":[224],"more":[227,258],"robust":[228],"stable":[230],"than":[231,259],"tools":[234],"about":[236],"60%":[237],"while":[241],"able":[244],"achieve":[246],"even":[248],"greater":[249],"improvement":[250],"95%":[260],"genes.":[263]},"counts_by_year":[{"year":2023,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-17T06:14:20.161405","created_date":"2025-10-10T00:00:00"}
