{"id":"https://openalex.org/W2124388496","doi":"https://doi.org/10.1093/bioinformatics/btg455","title":"FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes","display_name":"FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes","publication_year":2004,"publication_date":"2004-01-22","ids":{"openalex":"https://openalex.org/W2124388496","doi":"https://doi.org/10.1093/bioinformatics/btg455","mag":"2124388496","pmid":"https://pubmed.ncbi.nlm.nih.gov/14990455"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg455","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/4/578/48905121/bioinformatics_20_4_578.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/4/578/48905121/bioinformatics_20_4_578.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027004121","display_name":"F\u00e1tima Al\u2010Shahrour","orcid":"https://orcid.org/0000-0003-2373-769X"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"F\u00e1tima Al-Shahrour","raw_affiliation_strings":["Bioinformatics Unit, Centro Nacional de Investigaciones Oncol\u00f3gicas (CNIO), Melchor Fern\u00e1ndez Almagro 3, 28029 Madrid, Spain","Bioinformatics Unit, Centro Nacional de Investigaciones Oncol\u00f3gicas (CNIO), Melchor Fern\u00e1ndez Almagro 3, 28029 Madrid, Spain#TAB#"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Centro Nacional de Investigaciones Oncol\u00f3gicas (CNIO), Melchor Fern\u00e1ndez Almagro 3, 28029 Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]},{"raw_affiliation_string":"Bioinformatics Unit, Centro Nacional de Investigaciones Oncol\u00f3gicas (CNIO), Melchor Fern\u00e1ndez Almagro 3, 28029 Madrid, Spain#TAB#","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080620893","display_name":"Ram\u00f3n D\u00edaz\u2010Uriarte","orcid":"https://orcid.org/0000-0002-6637-9039"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ram\u00f3n D\u00edaz-Uriarte","raw_affiliation_strings":["Bioinformatics Unit, Centro Nacional de Investigaciones Oncol\u00f3gicas (CNIO), Melchor Fern\u00e1ndez Almagro 3, 28029 Madrid, Spain#TAB#"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Centro Nacional de Investigaciones Oncol\u00f3gicas (CNIO), Melchor Fern\u00e1ndez Almagro 3, 28029 Madrid, Spain#TAB#","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074140420","display_name":"Joaqu\u0131\u0301n Dopazo","orcid":"https://orcid.org/0000-0003-3318-120X"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Joaqu\u00edn Dopazo","raw_affiliation_strings":["Bioinformatics Unit, Centro Nacional de Investigaciones Oncol\u00f3gicas (CNIO), Melchor Fern\u00e1ndez Almagro 3, 28029 Madrid, Spain#TAB#"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Centro Nacional de Investigaciones Oncol\u00f3gicas (CNIO), Melchor Fern\u00e1ndez Almagro 3, 28029 Madrid, Spain#TAB#","institution_ids":["https://openalex.org/I4210089594"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5027004121"],"corresponding_institution_ids":["https://openalex.org/I4210089594"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":41.8421,"has_fulltext":false,"cited_by_count":1140,"citation_normalized_percentile":{"value":0.99956095,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"20","issue":"4","first_page":"578","last_page":"580"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.7468165159225464},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6699327230453491},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5509006381034851},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49979352951049805},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4688716232776642},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.45753103494644165},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42682385444641113},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3950551152229309},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.04844030737876892}],"concepts":[{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.7468165159225464},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6699327230453491},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5509006381034851},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49979352951049805},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4688716232776642},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.45753103494644165},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42682385444641113},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3950551152229309},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.04844030737876892},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btg455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg455","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/4/578/48905121/bioinformatics_20_4_578.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14990455","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14990455","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg455","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg455","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/4/578/48905121/bioinformatics_20_4_578.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124388496.pdf","grobid_xml":"https://content.openalex.org/works/W2124388496.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1596515083","https://openalex.org/W1965138864","https://openalex.org/W1982516880","https://openalex.org/W1998902445","https://openalex.org/W2071828122","https://openalex.org/W2103017472","https://openalex.org/W2107556259","https://openalex.org/W2108819945","https://openalex.org/W2109327803","https://openalex.org/W2110065044","https://openalex.org/W2131989143","https://openalex.org/W2151598682","https://openalex.org/W2154437541","https://openalex.org/W2159203162","https://openalex.org/W2159751674","https://openalex.org/W2171667218","https://openalex.org/W2261215572","https://openalex.org/W2495373072"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W2804669904","https://openalex.org/W2149777447","https://openalex.org/W2347456287","https://openalex.org/W2121651557","https://openalex.org/W2782969047","https://openalex.org/W2794341036"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2,27,40],"simple":[3],"but":[4],"powerful":[5],"procedure":[6,35],"to":[7],"extract":[8],"Gene":[9],"Ontology":[10],"(GO)":[11],"terms":[12],"that":[13],"are":[14],"significantly":[15],"over-":[16],"or":[17],"under-represented":[18],"in":[19],"sets":[20],"of":[21,26,56],"genes":[22],"within":[23],"the":[24,53,75,80],"context":[25],"genome-scale":[28],"experiment":[29],"(DNA":[30],"microarray,":[31],"proteomics,":[32],"etc.).":[33],"Said":[34],"has":[36],"been":[37],"implemented":[38],"as":[39],"web":[41],"application,":[42],"FatiGO,":[43,50],"allowing":[44],"for":[45,65],"easy":[46],"and":[47,72,74],"interactive":[48],"querying.":[49],"which":[51],"takes":[52],"multiple-testing":[54],"nature":[55],"statistical":[57],"contrast":[58],"into":[59],"account,":[60],"currently":[61],"includes":[62],"GO":[63],"associations":[64],"diverse":[66],"organisms":[67],"(human,":[68],"mouse,":[69],"fly,":[70],"worm":[71],"yeast)":[73],"TrEMBL/Swissprot":[76],"GOAnnotations@EBI":[77],"correspondences":[78],"from":[79],"European":[81],"Bioinformatics":[82],"Institute.":[83]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":39},{"year":2022,"cited_by_count":33},{"year":2021,"cited_by_count":41},{"year":2020,"cited_by_count":30},{"year":2019,"cited_by_count":25},{"year":2018,"cited_by_count":26},{"year":2017,"cited_by_count":31},{"year":2016,"cited_by_count":33},{"year":2015,"cited_by_count":31},{"year":2014,"cited_by_count":40},{"year":2013,"cited_by_count":47},{"year":2012,"cited_by_count":77}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
