{"id":"https://openalex.org/W2113774468","doi":"https://doi.org/10.1093/bioinformatics/btg444","title":"VisCoSe: visualization and comparison of consensus sequences","display_name":"VisCoSe: visualization and comparison of consensus sequences","publication_year":2004,"publication_date":"2004-01-22","ids":{"openalex":"https://openalex.org/W2113774468","doi":"https://doi.org/10.1093/bioinformatics/btg444","mag":"2113774468","pmid":"https://pubmed.ncbi.nlm.nih.gov/14960475"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg444","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/3/433/456204/btg444.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/3/433/456204/btg444.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001620794","display_name":"Michael Spitzer","orcid":"https://orcid.org/0000-0003-2173-9317"},"institutions":[{"id":"https://openalex.org/I4210103666","display_name":"University Hospital M\u00fcnster","ror":"https://ror.org/01856cw59","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210103666"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Michael Spitzer","raw_affiliation_strings":["Integrated Functional Genomics, IZKF, University Hospital M\u00fcnster, Von-Esmarch-Str. 56, 48149 M\u00fcnster, Germany. michael.spitzer@uni-muenster.de","Integrated Functional Genomics, IZKF, University Hospital M\u00fcnster, Von-Esmarch-Str. 56, 48149 M\u00fcnster, Germany,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Integrated Functional Genomics, IZKF, University Hospital M\u00fcnster, Von-Esmarch-Str. 56, 48149 M\u00fcnster, Germany. michael.spitzer@uni-muenster.de","institution_ids":["https://openalex.org/I4210103666"]},{"raw_affiliation_string":"Integrated Functional Genomics, IZKF, University Hospital M\u00fcnster, Von-Esmarch-Str. 56, 48149 M\u00fcnster, Germany,#TAB#","institution_ids":["https://openalex.org/I4210103666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089023752","display_name":"Georg Fuellen","orcid":"https://orcid.org/0000-0002-4994-9829"},"institutions":[{"id":"https://openalex.org/I4210103666","display_name":"University Hospital M\u00fcnster","ror":"https://ror.org/01856cw59","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210103666"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Georg Fuellen","raw_affiliation_strings":["Integrated Functional Genomics, IZKF, University Hospital M\u00fcnster, Von-Esmarch-Str. 56, 48149 M\u00fcnster, Germany,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Integrated Functional Genomics, IZKF, University Hospital M\u00fcnster, Von-Esmarch-Str. 56, 48149 M\u00fcnster, Germany,#TAB#","institution_ids":["https://openalex.org/I4210103666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042316631","display_name":"Paul Cullen","orcid":"https://orcid.org/0000-0002-0600-7268"},"institutions":[{"id":"https://openalex.org/I315704651","display_name":"Leibniz Association","ror":"https://ror.org/01n6r0e97","country_code":"DE","type":"government","lineage":["https://openalex.org/I315704651"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Paul Cullen","raw_affiliation_strings":["Institute of Arteriosclerosis Research, Domagkstr. 3, 48149 M\u00fcnster, Germany,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Arteriosclerosis Research, Domagkstr. 3, 48149 M\u00fcnster, Germany,#TAB#","institution_ids":["https://openalex.org/I315704651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063602616","display_name":"Stefan Lorkowski","orcid":"https://orcid.org/0000-0002-9649-840X"},"institutions":[{"id":"https://openalex.org/I315704651","display_name":"Leibniz Association","ror":"https://ror.org/01n6r0e97","country_code":"DE","type":"government","lineage":["https://openalex.org/I315704651"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Lorkowski","raw_affiliation_strings":["Institute of Arteriosclerosis Research, Domagkstr. 3, 48149 M\u00fcnster, Germany,#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Arteriosclerosis Research, Domagkstr. 3, 48149 M\u00fcnster, Germany,#TAB#","institution_ids":["https://openalex.org/I315704651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001620794"],"corresponding_institution_ids":["https://openalex.org/I4210103666"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.958,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.73087157,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"20","issue":"3","first_page":"433","last_page":"435"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.8585000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.8585000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.8392000198364258,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10445","display_name":"Antioxidant Activity and Oxidative Stress","score":0.7842000126838684,"subfield":{"id":"https://openalex.org/subfields/2704","display_name":"Biochemistry"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/viscose","display_name":"Viscose","score":0.7111827731132507},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6835125088691711},{"id":"https://openalex.org/keywords/consensus-sequence","display_name":"Consensus sequence","score":0.5535424947738647},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4950841963291168},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3177567720413208},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1739659309387207},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.14577168226242065},{"id":"https://openalex.org/keywords/base-sequence","display_name":"Base sequence","score":0.07691517472267151},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07211145758628845}],"concepts":[{"id":"https://openalex.org/C2187297","wikidata":"https://www.wikidata.org/wiki/Q910194","display_name":"Viscose","level":2,"score":0.7111827731132507},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6835125088691711},{"id":"https://openalex.org/C54985914","wikidata":"https://www.wikidata.org/wiki/Q1295754","display_name":"Consensus sequence","level":4,"score":0.5535424947738647},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4950841963291168},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3177567720413208},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1739659309387207},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.14577168226242065},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.07691517472267151},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07211145758628845},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016384","descriptor_name":"Consensus Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btg444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg444","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/3/433/456204/btg444.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14960475","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14960475","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.658.3966","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.658.3966","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.stefan-lorkowski.de/pubs/papers/Bioinformatics_2004_20-3_433-435.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.962.9124","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.962.9124","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/20/3/433.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg444","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/3/433/456204/btg444.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W124504601","https://openalex.org/W1986014242","https://openalex.org/W2041877620","https://openalex.org/W2106882534","https://openalex.org/W2127774996","https://openalex.org/W2160521949"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1975403237","https://openalex.org/W2084783432","https://openalex.org/W2332694755","https://openalex.org/W4249651201","https://openalex.org/W2035206978","https://openalex.org/W4386390763","https://openalex.org/W2339995219","https://openalex.org/W2007230688","https://openalex.org/W2321824137"],"abstract_inverted_index":{"We":[0],"introduce":[1],"visualization":[2,55],"and":[3,13,22,28,46],"comparison":[4],"of":[5,26,42,56,59],"consensus":[6,24,40,50],"sequences":[7,25,41],"(VisCoSe)":[8],"as":[9],"a":[10,14],"WWW":[11],"service":[12],"stand-alone":[15],"command":[16],"line":[17],"Perl":[18],"script":[19],"for":[20],"visualizing":[21],"comparing":[23],"protein":[27],"nucleotide":[29],"sequences.":[30,51],"VisCoSe":[31,53],"is":[32],"the":[33],"only":[34],"interface":[35],"available":[36],"that":[37],"simultaneously":[38],"calculates":[39],"multiple":[43],"data":[44],"sets":[45],"automatically":[47],"compares":[48],"these":[49],"Furthermore,":[52],"allows":[54],"chemical":[57],"properties":[58],"amino":[60],"acids.":[61]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
