{"id":"https://openalex.org/W2167609496","doi":"https://doi.org/10.1093/bioinformatics/btg426","title":"PIVOT: Protein Interacions VisualizatiOn Tool","display_name":"PIVOT: Protein Interacions VisualizatiOn Tool","publication_year":2004,"publication_date":"2004-01-22","ids":{"openalex":"https://openalex.org/W2167609496","doi":"https://doi.org/10.1093/bioinformatics/btg426","mag":"2167609496","pmid":"https://pubmed.ncbi.nlm.nih.gov/14960471"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg426","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg426","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/3/424/48905247/bioinformatics_20_3_424.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/3/424/48905247/bioinformatics_20_3_424.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075833913","display_name":"Nir Orlev","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Nir Orlev","raw_affiliation_strings":["Department of Human Genetics, Faculty of Medicine, Tel Aviv University, Israel. niro@post.tau.ac.il","Department of Human Genetics, Faculty of Medicine and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Faculty of Medicine, Tel Aviv University, Israel. niro@post.tau.ac.il","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Department of Human Genetics, Faculty of Medicine and","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038806020","display_name":"Ron Shamir","orcid":"https://orcid.org/0000-0003-1889-9870"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ron Shamir","raw_affiliation_strings":["School of Computer Science, Tel Aviv University, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Tel Aviv University, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086398854","display_name":"Yosef Shiloh","orcid":"https://orcid.org/0000-0002-1538-6060"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yosef Shiloh","raw_affiliation_strings":["Department of Human Genetics, Faculty of Medicine and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Faculty of Medicine and","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5075833913"],"corresponding_institution_ids":["https://openalex.org/I16391192"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5676,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.64171662,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"20","issue":"3","first_page":"424","last_page":"425"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9745000004768372,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9416999816894531,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8430761098861694},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7995800971984863},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6199547052383423},{"id":"https://openalex.org/keywords/information-visualization","display_name":"Information visualization","score":0.5740958452224731},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.5519744753837585},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5016436576843262},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4446975886821747},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4144139289855957},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36695432662963867},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13135015964508057}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8430761098861694},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7995800971984863},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6199547052383423},{"id":"https://openalex.org/C185578843","wikidata":"https://www.wikidata.org/wiki/Q10609775","display_name":"Information visualization","level":3,"score":0.5740958452224731},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.5519744753837585},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5016436576843262},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4446975886821747},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4144139289855957},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36695432662963867},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13135015964508057}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btg426","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg426","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/3/424/48905247/bioinformatics_20_3_424.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14960471","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14960471","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg426","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg426","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/3/424/48905247/bioinformatics_20_3_424.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167609496.pdf","grobid_xml":"https://content.openalex.org/works/W2167609496.grobid-xml"},"referenced_works_count":1,"referenced_works":["https://openalex.org/W2096358531"],"related_works":["https://openalex.org/W2105200106","https://openalex.org/W1574055964","https://openalex.org/W2104025928","https://openalex.org/W2295030662","https://openalex.org/W4225274103","https://openalex.org/W2923661510","https://openalex.org/W2006240110","https://openalex.org/W1938514595","https://openalex.org/W2751110224","https://openalex.org/W2520625499"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"Protein":[2],"Interaction":[3],"VisualizatiOn":[4],"Tool":[5],"(PIVOT)":[6],"is":[7,48,57,137],"a":[8,43],"visualization":[9],"tool":[10],"for":[11,92,126],"protein\u2013protein":[12],"interactions.":[13],"It":[14,66],"allows":[15,83],"the":[16,39,51,77,84,88],"user":[17,35,78,85,102],"to":[18,63,86,99,107],"create":[19],"personal":[20],"data":[21,32,41,90],"sets":[22],"of":[23,54],"interactions":[24,89,110,115],"by":[25],"combining":[26],"information":[27],"from":[28],"private":[29],"and":[30,56,59,72],"public":[31],"sources.":[33],"The":[34,101],"can":[36,103],"gradually":[37],"access":[38],"interactions'":[40],"using":[42],"clear":[44],"interactive":[45],"map":[46],"that":[47,75,96],"focused":[49],"on":[50,114],"researcher's":[52],"protein":[53],"interest,":[55],"reshaped":[58],"expanded":[60],"in":[61,120],"response":[62],"his/her":[64],"queries.":[65],"also":[67,104],"offers":[68],"several":[69],"visual":[70],"enhancements":[71],"intelligent":[73],"queries":[74],"help":[76],"efficiently":[79],"study":[80],"it.":[81],"PIVOT":[82,106],"search":[87],"set":[91],"paths":[93],"connecting":[94],"proteins":[95,119],"are":[97],"expected":[98],"co-operate.":[100],"employ":[105],"predict":[108],"unknown":[109],"among":[111,116],"proteins,":[112],"based":[113],"their":[117],"homologous":[118],"other":[121],"species.":[122],"Availability:":[123],"Freely":[124],"available":[125,138],"academic":[127],"users,":[128],"at":[129,139],"http://www.cs.tau.ac.il/~rshamir/pivot":[130],"Supplementary":[131],"information:":[132],"A":[133],"demonstration":[134],"video":[135],"clip":[136],"http://www.cs.tau.ac.il/~rshamir/pivot/Demo.avi":[140]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":4}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
