{"id":"https://openalex.org/W2130748131","doi":"https://doi.org/10.1093/bioinformatics/btg390","title":"Shared relationship analysis: ranking set cohesion and commonalities within a literature-derived relationship network","display_name":"Shared relationship analysis: ranking set cohesion and commonalities within a literature-derived relationship network","publication_year":2004,"publication_date":"2004-01-20","ids":{"openalex":"https://openalex.org/W2130748131","doi":"https://doi.org/10.1093/bioinformatics/btg390","mag":"2130748131","pmid":"https://pubmed.ncbi.nlm.nih.gov/14734310"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg390","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/2/191/48905349/bioinformatics_20_2_191.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/2/191/48905349/bioinformatics_20_2_191.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006115537","display_name":"Jonathan D. Wren","orcid":"https://orcid.org/0000-0003-2776-3545"},"institutions":[{"id":"https://openalex.org/I8692664","display_name":"University of Oklahoma","ror":"https://ror.org/02aqsxs83","country_code":"US","type":"education","lineage":["https://openalex.org/I8692664"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jonathan D. Wren","raw_affiliation_strings":["Advanced Center for Genome Technology, Department of Botany and Microbiology, The University of Oklahoma, 620 Parrington Oval, Rm. 106, Norman, OK 73019, USA. Jonathan.Wren@OU.edu","Advanced Center for Genome Technology, Department of Botany and Microbiology, The University of Oklahoma, 620 Parrington Oval, Rm. 106, Norman, OK 73019#TAB#"],"affiliations":[{"raw_affiliation_string":"Advanced Center for Genome Technology, Department of Botany and Microbiology, The University of Oklahoma, 620 Parrington Oval, Rm. 106, Norman, OK 73019, USA. Jonathan.Wren@OU.edu","institution_ids":["https://openalex.org/I8692664"]},{"raw_affiliation_string":"Advanced Center for Genome Technology, Department of Botany and Microbiology, The University of Oklahoma, 620 Parrington Oval, Rm. 106, Norman, OK 73019#TAB#","institution_ids":["https://openalex.org/I8692664"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054216133","display_name":"Harold R. Garner","orcid":"https://orcid.org/0000-0001-5359-5990"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"education","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harold R. Garner","raw_affiliation_strings":["McDermott Center for Human Growth and Development, Departments of Biochemistry and Internal Medicine, Center for Biomedical Inventions, The University of Texas Southwestern Medical Center, 5323 Ha ...#TAB#"],"affiliations":[{"raw_affiliation_string":"McDermott Center for Human Growth and Development, Departments of Biochemistry and Internal Medicine, Center for Biomedical Inventions, The University of Texas Southwestern Medical Center, 5323 Ha ...#TAB#","institution_ids":["https://openalex.org/I867280407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5006115537"],"corresponding_institution_ids":["https://openalex.org/I8692664"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.0286,"has_fulltext":false,"cited_by_count":110,"citation_normalized_percentile":{"value":0.96352497,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"20","issue":"2","first_page":"191","last_page":"198"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cohesion","display_name":"Cohesion (chemistry)","score":0.7686918377876282},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.706365704536438},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6662964224815369},{"id":"https://openalex.org/keywords/group-cohesiveness","display_name":"Group cohesiveness","score":0.6436594128608704},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.6349740028381348},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.6291537880897522},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5654287934303284},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4853783845901489},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3823643922805786},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.12871035933494568}],"concepts":[{"id":"https://openalex.org/C104054115","wikidata":"https://www.wikidata.org/wiki/Q216828","display_name":"Cohesion (chemistry)","level":2,"score":0.7686918377876282},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.706365704536438},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6662964224815369},{"id":"https://openalex.org/C14641543","wikidata":"https://www.wikidata.org/wiki/Q553270","display_name":"Group cohesiveness","level":2,"score":0.6436594128608704},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.6349740028381348},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.6291537880897522},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5654287934303284},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4853783845901489},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3823643922805786},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.12871035933494568},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btg390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg390","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/2/191/48905349/bioinformatics_20_2_191.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14734310","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14734310","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg390","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/2/191/48905349/bioinformatics_20_2_191.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6299999952316284}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310169","display_name":"University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130748131.pdf","grobid_xml":"https://content.openalex.org/works/W2130748131.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W90158706","https://openalex.org/W1566012138","https://openalex.org/W1981933378","https://openalex.org/W1994127362","https://openalex.org/W2023736097","https://openalex.org/W2024651624","https://openalex.org/W2045340002","https://openalex.org/W2052478761","https://openalex.org/W2062584010","https://openalex.org/W2063993968","https://openalex.org/W2069334446","https://openalex.org/W2072418409","https://openalex.org/W2079509939","https://openalex.org/W2090670402","https://openalex.org/W2103017472","https://openalex.org/W2106093878","https://openalex.org/W2115159360","https://openalex.org/W2121466369","https://openalex.org/W2123619788","https://openalex.org/W2137297622","https://openalex.org/W2152698860","https://openalex.org/W2159203162","https://openalex.org/W2169974160","https://openalex.org/W2171667218","https://openalex.org/W2171884243"],"related_works":["https://openalex.org/W2581240705","https://openalex.org/W2041353081","https://openalex.org/W1572278127","https://openalex.org/W4287690154","https://openalex.org/W3048366122","https://openalex.org/W3094502663","https://openalex.org/W2152204162","https://openalex.org/W1934841634","https://openalex.org/W4289552663","https://openalex.org/W54129904"],"abstract_inverted_index":{"We":[0],"first":[1],"establish":[2],"a":[3,30,49,64,71],"network":[4,20,51],"of":[5,16,67,70,73,98],"related":[6,80,101],"objects":[7,17,74,79],"by":[8,39],"their":[9,36,90],"co-occurrence":[10],"within":[11,18],"MEDLINE":[12],"records.":[13],"A":[14,96],"set":[15,72,83],"this":[19,61,82],"can":[21,107],"then":[22],"be":[23,46,85,108],"queried":[24],"to":[25,34,81,84,92,102],"identify":[26],"shared":[27],"relationships,":[28],"and":[29,87],"method":[31,62],"is":[32],"presented":[33],"score":[35],"statistical":[37],"relevance":[38],"comparing":[40],"observed":[41],"frequencies":[42],"with":[43],"what":[44],"would":[45],"expected":[47],"in":[48],"random":[50],"model.":[52],"Using":[53],"Gene":[54],"Ontology":[55],"(GO)":[56],"categories,":[57],"we":[58],"demonstrate":[59],"that":[60],"enables":[63],"quantitative":[65],"ranking":[66],"the":[68],"'cohesiveness'":[69],"and,":[75],"importantly,":[76],"allows":[77],"other":[78],"identified":[86],"evaluated":[88],"for":[89],"'cohesion'":[91],"it.":[93],"Supplemental":[94],"information:":[95],"list":[97],"ranked":[99],"genes":[100],"each":[103],"GO":[104],"category":[105],"analyzed":[106],"found":[109],"at":[110],"http://innovation.swmed.edu/IRIDESCENT/GO_relationships.htm":[111]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":6}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
