{"id":"https://openalex.org/W1991427566","doi":"https://doi.org/10.1093/bioinformatics/btg372","title":"Light-weight integration of molecular biological databases","display_name":"Light-weight integration of molecular biological databases","publication_year":2003,"publication_date":"2003-12-23","ids":{"openalex":"https://openalex.org/W1991427566","doi":"https://doi.org/10.1093/bioinformatics/btg372","mag":"1991427566","pmid":"https://pubmed.ncbi.nlm.nih.gov/14693808"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg372","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/1/51/48905267/bioinformatics_20_1_51.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/20/1/51/48905267/bioinformatics_20_1_51.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025916750","display_name":"Stephan Philippi","orcid":null},"institutions":[{"id":"https://openalex.org/I16264642","display_name":"Koblenz University of Applied Sciences","ror":"https://ror.org/04j351e79","country_code":"DE","type":"education","lineage":["https://openalex.org/I16264642"]},{"id":"https://openalex.org/I4387153937","display_name":"Universit\u00e4t Koblenz","ror":"https://ror.org/0433e6t24","country_code":"DE","type":"education","lineage":["https://openalex.org/I4387153937"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Stephan Philippi","raw_affiliation_strings":["Department of Computer Science, University of Koblenz, P.O. Box 201 106, 56016 Koblenz, Germany. philippi@uni-koblenz.de","Department of Computer Science, University of Koblenz, P.O. Box 201 106, 56016 Koblenz, Germany#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Koblenz, P.O. Box 201 106, 56016 Koblenz, Germany. philippi@uni-koblenz.de","institution_ids":["https://openalex.org/I16264642","https://openalex.org/I4387153937"]},{"raw_affiliation_string":"Department of Computer Science, University of Koblenz, P.O. Box 201 106, 56016 Koblenz, Germany#TAB#","institution_ids":["https://openalex.org/I16264642","https://openalex.org/I4387153937"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5025916750"],"corresponding_institution_ids":["https://openalex.org/I16264642","https://openalex.org/I4387153937"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6595,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.82943982,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"20","issue":"1","first_page":"51","last_page":"57"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.2037999927997589,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.2037999927997589,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.17190000414848328,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.148499995470047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.7276796102523804},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7183325886726379},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.5829360485076904},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.562740683555603},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4823164939880371},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4625598192214966},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.22819030284881592},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.16130536794662476},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08401012420654297}],"concepts":[{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.7276796102523804},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7183325886726379},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.5829360485076904},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.562740683555603},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4823164939880371},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4625598192214966},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.22819030284881592},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16130536794662476},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08401012420654297},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D010865","descriptor_name":"Pilot Projects","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010865","descriptor_name":"Pilot Projects","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010865","descriptor_name":"Pilot Projects","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btg372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg372","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/1/51/48905267/bioinformatics_20_1_51.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14693808","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14693808","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg372","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/20/1/51/48905267/bioinformatics_20_1_51.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5699999928474426,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323389","display_name":"Universit\u00e4t Bielefeld","ror":"https://ror.org/02hpadn98"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1482515444","https://openalex.org/W1654805921","https://openalex.org/W1730348256","https://openalex.org/W1937151504","https://openalex.org/W1973415432","https://openalex.org/W1979837251","https://openalex.org/W1983594585","https://openalex.org/W2001964005","https://openalex.org/W2003144438","https://openalex.org/W2007550282","https://openalex.org/W2035923305","https://openalex.org/W2096525273","https://openalex.org/W2101795508","https://openalex.org/W2102051060","https://openalex.org/W2103487267","https://openalex.org/W2122516179","https://openalex.org/W2141824507","https://openalex.org/W2142890842","https://openalex.org/W2160948978","https://openalex.org/W2161666572","https://openalex.org/W2916406266"],"related_works":["https://openalex.org/W4312158493","https://openalex.org/W2033835987","https://openalex.org/W4248750016","https://openalex.org/W4205092877","https://openalex.org/W1824784554","https://openalex.org/W2739872940","https://openalex.org/W3141940143","https://openalex.org/W1979295894","https://openalex.org/W2307569040","https://openalex.org/W1561860948"],"abstract_inverted_index":{"MOTIVATION:":[0],"Due":[1],"to":[2,40,44,59],"the":[3,11,52,70,85,89,97,114,120,133],"increasing":[4],"number":[5],"of":[6,14,23,84,88],"molecular":[7,60],"biological":[8,61],"databases":[9],"and":[10,119,125],"exponential":[12],"growth":[13],"their":[15],"contents,":[16],"database":[17,62,74,116],"integration":[18,75],"is":[19,100,104],"an":[20,82],"important":[21],"topic":[22],"research":[24],"in":[25,29,33],"bioinformatics.":[26],"Existing":[27],"approaches":[28],"this":[30,68],"area":[31],"have":[32],"common":[34],"that":[35],"considerable":[36],"efforts":[37,71],"are":[38,128],"needed":[39,72],"provide":[41],"integrated":[42],"access":[43],"heterogeneous":[45],"data":[46],"sources.":[47],"RESULTS:":[48],"This":[49,102],"article":[50],"describes":[51],"LIMBO":[53,98],"architecture":[54,99],"as":[55],"a":[56,92],"light-weight":[57],"approach":[58],"integration.":[63],"By":[64],"building":[65],"systems":[66],"upon":[67,96,130],"architecture,":[69],"for":[73],"can":[76],"be":[77],"significantly":[78],"lowered.":[79],"AVAILABILITY:":[80],"As":[81],"illustration":[83],"principle":[86],"usefulness":[87],"underlying":[90],"ideas,":[91],"prototypical":[93],"implementation":[94,103],"based":[95,106],"described.":[101],"exclusively":[105],"on":[107],"freely":[108],"available":[109,129],"open":[110],"source":[111],"components":[112,127],"like":[113],"PostgreSQL":[115],"management":[117],"system":[118],"BioRuby":[121],"project.":[122],"Additional":[123],"files":[124],"modified":[126],"request":[131],"from":[132],"author.":[134]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
