{"id":"https://openalex.org/W2098115043","doi":"https://doi.org/10.1093/bioinformatics/btg291","title":"GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data","display_name":"GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data","publication_year":2003,"publication_date":"2003-11-01","ids":{"openalex":"https://openalex.org/W2098115043","doi":"https://doi.org/10.1093/bioinformatics/btg291","mag":"2098115043","pmid":"https://pubmed.ncbi.nlm.nih.gov/14594726"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg291","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg291","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/16/2158/48904634/bioinformatics_19_16_2158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/19/16/2158/48904634/bioinformatics_19_16_2158.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101836939","display_name":"Luis Alfonso Mart\u00ednez\u2010Cruz","orcid":"https://orcid.org/0000-0002-5856-9377"},"institutions":[{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Luis A. Mart\u00ednez-Cruz","raw_affiliation_strings":["Department of Internal Medicine, Unit of Proteomics, Genomics and Bioinformatics, University of Navarra, Pamplona-31008, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, Unit of Proteomics, Genomics and Bioinformatics, University of Navarra, Pamplona-31008, Spain","institution_ids":["https://openalex.org/I88155538"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046603247","display_name":"\u00c1ngel Rubio","orcid":"https://orcid.org/0000-0002-3274-2450"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Angel Rubio","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074181141","display_name":"Maria Luz Mart\u00ednez\u2010Chantar","orcid":"https://orcid.org/0000-0002-6446-9911"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mar\u00eda L. Mart\u00ednez-Chantar","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025326086","display_name":"Alberto Labarga","orcid":"https://orcid.org/0000-0001-6781-893X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alberto Labarga","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085976287","display_name":"Isabel C. Barrio","orcid":"https://orcid.org/0000-0002-8120-5248"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Isabel Barrio","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048015801","display_name":"Adam Podhorski","orcid":"https://orcid.org/0000-0002-5567-9503"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Adam Podhorski","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076844152","display_name":"V\u00edctor Segura","orcid":"https://orcid.org/0000-0002-7740-6290"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Victor Segura","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033190467","display_name":"Jos\u00e9 L. Sevilla Campo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jos\u00e9 L. Sevilla Campo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016683081","display_name":"Mat\u00edas A. \u00c1vila","orcid":"https://orcid.org/0000-0001-6570-3557"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mat\u00edas A. Avila","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5008532501","display_name":"Jos\u00e9 M. Mato","orcid":"https://orcid.org/0000-0003-1264-3153"},"institutions":[{"id":"https://openalex.org/I88155538","display_name":"Universidad de Navarra","ror":"https://ror.org/02rxc7m23","country_code":"ES","type":"education","lineage":["https://openalex.org/I88155538"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jose M. Mato","raw_affiliation_strings":["University of Navarra)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Navarra)","institution_ids":["https://openalex.org/I88155538"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5101836939"],"corresponding_institution_ids":["https://openalex.org/I88155538"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8019,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.70277486,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"19","issue":"16","first_page":"2158","last_page":"2160"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.44440001249313354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.44440001249313354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.22609999775886536,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.04820000007748604,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8055702447891235},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6890369653701782},{"id":"https://openalex.org/keywords/complementary-dna","display_name":"Complementary DNA","score":0.6275913119316101},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.580385684967041},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.5064157247543335},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.4798687994480133},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46245479583740234},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.43618202209472656},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40387314558029175},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29852473735809326},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18212658166885376},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12131479382514954}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8055702447891235},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6890369653701782},{"id":"https://openalex.org/C187882448","wikidata":"https://www.wikidata.org/wiki/Q283478","display_name":"Complementary DNA","level":3,"score":0.6275913119316101},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.580385684967041},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.5064157247543335},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.4798687994480133},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46245479583740234},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.43618202209472656},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40387314558029175},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29852473735809326},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18212658166885376},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12131479382514954}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btg291","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg291","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/16/2158/48904634/bioinformatics_19_16_2158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:14594726","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/14594726","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dadun.unav.edu:10171/23230","is_oa":true,"landing_page_url":"http://hdl.handle.net/10171/23230","pdf_url":null,"source":{"id":"https://openalex.org/S4306401514","display_name":"Deposito Adademico Digital Universidad De Navarra (University of Navarra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I88155538","host_organization_name":"Universidad de Navarra","host_organization_lineage":["https://openalex.org/I88155538"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg291","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg291","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/16/2158/48904634/bioinformatics_19_16_2158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3729371673","display_name":null,"funder_award_id":"R01 AA-12677","funder_id":"https://openalex.org/F4320337330","funder_display_name":"National Institute on Alcohol Abuse and Alcoholism"}],"funders":[{"id":"https://openalex.org/F4320337330","display_name":"National Institute on Alcohol Abuse and Alcoholism","ror":"https://ror.org/02jzrsm59"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1679913846","https://openalex.org/W1970472404","https://openalex.org/W1985064413","https://openalex.org/W2020033148","https://openalex.org/W2035450351","https://openalex.org/W2054592680","https://openalex.org/W2081535641","https://openalex.org/W2094883982","https://openalex.org/W2099373309","https://openalex.org/W2103453943","https://openalex.org/W2131989143","https://openalex.org/W2135187880","https://openalex.org/W2150926065","https://openalex.org/W2165011536","https://openalex.org/W2165270659","https://openalex.org/W2165298438","https://openalex.org/W2166699767"],"related_works":["https://openalex.org/W3152114242","https://openalex.org/W2796636403","https://openalex.org/W170658859","https://openalex.org/W2028324514","https://openalex.org/W2151007749","https://openalex.org/W2074092657","https://openalex.org/W4310366902","https://openalex.org/W2490137852","https://openalex.org/W1483316219","https://openalex.org/W3023720143"],"abstract_inverted_index":{"SUMMARY:":[0],"Genomic":[1],"Analysis":[2],"and":[3,20],"Rapid":[4],"Biological":[5],"ANnotation":[6],"(GARBAN)":[7],"is":[8],"a":[9,50],"new":[10],"tool":[11],"that":[12],"provides":[13,77],"an":[14],"integrated":[15],"framework":[16],"to":[17,41],"analyze":[18],"simultaneously":[19],"compare":[21],"multiple":[22],"data":[23],"sets":[24,65],"derived":[25],"from":[26],"microarray":[27],"or":[28,38,70],"proteomic":[29],"experiments.":[30],"It":[31],"carries":[32],"out":[33],"automated":[34],"classifications":[35],"of":[36,44,52,63,80],"genes":[37],"proteins":[39],"according":[40],"the":[42,45,56,81,87],"criteria":[43],"Gene":[46],"Ontology":[47],"Consortium":[48],"at":[49],"level":[51],"depth":[53],"defined":[54],"by":[55],"user.":[57],"Additionally,":[58],"it":[59],"performs":[60],"clustering":[61],"analysis":[62],"all":[64,86],"based":[66],"on":[67,71],"functional":[68],"categories":[69],"differential":[72],"expression":[73],"levels.":[74],"GARBAN":[75],"also":[76],"graphical":[78],"representations":[79],"biological":[82],"pathways":[83],"in":[84],"which":[85],"genes/proteins":[88],"participate.":[89],"AVAILABILITY:":[90],"http://garban.tecnun.es.":[91]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
