{"id":"https://openalex.org/W2153153865","doi":"https://doi.org/10.1093/bioinformatics/btg224","title":"PISCES: a protein sequence culling server","display_name":"PISCES: a protein sequence culling server","publication_year":2003,"publication_date":"2003-08-11","ids":{"openalex":"https://openalex.org/W2153153865","doi":"https://doi.org/10.1093/bioinformatics/btg224","mag":"2153153865","pmid":"https://pubmed.ncbi.nlm.nih.gov/12912846"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg224","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg224","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/12/1589/718266/btg224.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/19/12/1589/718266/btg224.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100696240","display_name":"Guoli Wang","orcid":"https://orcid.org/0000-0001-7390-3188"},"institutions":[{"id":"https://openalex.org/I1289437631","display_name":"Fox Chase Cancer Center","ror":"https://ror.org/0567t7073","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1289437631","https://openalex.org/I4210122924"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guoli Wang","raw_affiliation_strings":["Institute for Cancer Research, Fox Chase Cancer Center, 7701 Burholme Avenue, Philadelphia, PA 19111, USA","Institute for Cancer Research,\nFox Chase Cancer Center, 7701 Burholme Avenue,\nPhiladelphia, PA 19111, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Cancer Research, Fox Chase Cancer Center, 7701 Burholme Avenue, Philadelphia, PA 19111, USA","institution_ids":["https://openalex.org/I1289437631"]},{"raw_affiliation_string":"Institute for Cancer Research,\nFox Chase Cancer Center, 7701 Burholme Avenue,\nPhiladelphia, PA 19111, USA","institution_ids":["https://openalex.org/I1289437631"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053977807","display_name":"Roland L. Dunbrack","orcid":"https://orcid.org/0000-0001-7674-6667"},"institutions":[{"id":"https://openalex.org/I1289437631","display_name":"Fox Chase Cancer Center","ror":"https://ror.org/0567t7073","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1289437631","https://openalex.org/I4210122924"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roland L. Dunbrack","raw_affiliation_strings":["Institute for Cancer Research, Fox Chase Cancer Center, 7701 Burholme Avenue, Philadelphia, PA 19111, USA","Institute for Cancer Research,\nFox Chase Cancer Center, 7701 Burholme Avenue,\nPhiladelphia, PA 19111, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Cancer Research, Fox Chase Cancer Center, 7701 Burholme Avenue, Philadelphia, PA 19111, USA","institution_ids":["https://openalex.org/I1289437631"]},{"raw_affiliation_string":"Institute for Cancer Research,\nFox Chase Cancer Center, 7701 Burholme Avenue,\nPhiladelphia, PA 19111, USA","institution_ids":["https://openalex.org/I1289437631"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I1289437631"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":19.6371,"has_fulltext":true,"cited_by_count":1762,"citation_normalized_percentile":{"value":0.99743493,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"19","issue":"12","first_page":"1589","last_page":"1591"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.810405969619751},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.769222617149353},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6579911708831787},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6232752203941345},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.5942360162734985},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.5538057684898376},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5108708739280701},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.504773736000061},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3700137436389923},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19022035598754883},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.13946357369422913},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1308993697166443}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.810405969619751},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.769222617149353},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6579911708831787},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6232752203941345},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.5942360162734985},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.5538057684898376},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5108708739280701},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.504773736000061},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3700137436389923},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19022035598754883},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.13946357369422913},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1308993697166443},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btg224","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg224","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/12/1589/718266/btg224.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:12912846","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12912846","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg224","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg224","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/12/1589/718266/btg224.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1064781665","display_name":null,"funder_award_id":"CA06972","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G927486529","display_name":null,"funder_award_id":"R01-HG02302","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2153153865.pdf","grobid_xml":"https://content.openalex.org/works/W2153153865.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W2074231493","https://openalex.org/W2088933990","https://openalex.org/W2096525273","https://openalex.org/W2106882534","https://openalex.org/W2116449290","https://openalex.org/W2130479394","https://openalex.org/W2137995988","https://openalex.org/W2145358391","https://openalex.org/W2147809382","https://openalex.org/W2149758239","https://openalex.org/W2150556577","https://openalex.org/W2168211076","https://openalex.org/W4242739003"],"related_works":["https://openalex.org/W3132544722","https://openalex.org/W3181892255","https://openalex.org/W2116496810","https://openalex.org/W151959011","https://openalex.org/W4205671017","https://openalex.org/W2022209941","https://openalex.org/W2114930488","https://openalex.org/W2103435205","https://openalex.org/W2153153865","https://openalex.org/W2915827701"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"PISCES":[2,26,66,102],"is":[3,77,128],"a":[4,113,118],"public":[5],"server":[6,127],"for":[7],"culling":[8],"sets":[9],"of":[10,38,115],"protein":[11,63],"sequences":[12,98,107],"from":[13,31,36,52,60],"the":[14,32,45,61,110],"Protein":[15],"Data":[16],"Bank":[17],"(PDB)":[18],"by":[19,44,92,109],"sequence":[20,48,64,85,90],"identity":[21,86,91],"and":[22,87],"structural":[23],"quality":[24],"criteria.":[25],"can":[27,103],"provide":[28],"lists":[29,37,70],"culled":[30],"entire":[33],"PDB":[34,39,97],"or":[35,41,122],"entries":[40],"chains":[42],"provided":[43,108],"user.":[46],"The":[47,126],"identities":[49],"are":[50,99],"obtained":[51],"PSI-BLAST":[53],"alignments":[54],"with":[55],"position-specific":[56],"substitution":[57],"matrices":[58],"derived":[59],"non-redundant":[62],"database.":[65],"therefore":[67],"provides":[68],"better":[69],"than":[71],"servers":[72],"that":[73],"use":[74],"BLAST,":[75],"which":[76],"unable":[78],"to":[79],"identify":[80],"many":[81],"relationships":[82],"below":[83],"40%":[84],"often":[88],"overestimates":[89],"aligning":[93],"only":[94],"well-conserved":[95],"fragments.":[96],"updated":[100],"weekly.":[101],"also":[104],"cull":[105],"non-PDB":[106],"user":[111],"as":[112],"list":[114],"GenBank":[116],"identifiers,":[117],"FASTA":[119],"format":[120],"file,":[121],"BLAST/PSI-BLAST":[123],"output.":[124],"Availability:":[125],"located":[129],"at":[130],"http://www.fccc.edu/research/labs/dunbrack/pisces":[131],"Contact:":[132],"rl_dunbrack@fccc.edu":[133],"*":[134],"To":[135],"whom":[136],"correspondence":[137],"should":[138],"be":[139],"addressed.":[140]},"counts_by_year":[{"year":2026,"cited_by_count":16},{"year":2025,"cited_by_count":51},{"year":2024,"cited_by_count":58},{"year":2023,"cited_by_count":74},{"year":2022,"cited_by_count":92},{"year":2021,"cited_by_count":98},{"year":2020,"cited_by_count":86},{"year":2019,"cited_by_count":93},{"year":2018,"cited_by_count":81},{"year":2017,"cited_by_count":78},{"year":2016,"cited_by_count":82},{"year":2015,"cited_by_count":82},{"year":2014,"cited_by_count":79},{"year":2013,"cited_by_count":105},{"year":2012,"cited_by_count":77}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
