{"id":"https://openalex.org/W2128801478","doi":"https://doi.org/10.1093/bioinformatics/btg223","title":"Secondary structure prediction with support vector machines","display_name":"Secondary structure prediction with support vector machines","publication_year":2003,"publication_date":"2003-09-01","ids":{"openalex":"https://openalex.org/W2128801478","doi":"https://doi.org/10.1093/bioinformatics/btg223","mag":"2128801478"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg223","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg223","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/13/1650/48930074/bioinformatics_19_13_1650.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/19/13/1650/48930074/bioinformatics_19_13_1650.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109229089","display_name":"J. J. Ward","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"J. J. Ward","raw_affiliation_strings":["Department of Computer Science, University College London, Gower Street, London WC1E 6BT, UK ()"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University College London, Gower Street, London WC1E 6BT, UK ()","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067569944","display_name":"Liam J. McGuffin","orcid":"https://orcid.org/0000-0003-4501-4767"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L. J. McGuffin","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108402432","display_name":"Bernard F. Buxton","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"B. F. Buxton","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5068654082","display_name":"David T. Jones","orcid":"https://orcid.org/0000-0001-8626-3765"},"institutions":[{"id":"https://openalex.org/I2800173700","display_name":"UCL Australia","ror":"https://ror.org/024atcf19","country_code":"AU","type":"education","lineage":["https://openalex.org/I2800173700"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"D. T. Jones","raw_affiliation_strings":["University college London"],"affiliations":[{"raw_affiliation_string":"University college London","institution_ids":["https://openalex.org/I2800173700"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5109229089"],"corresponding_institution_ids":["https://openalex.org/I45129253"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":52.157,"has_fulltext":false,"cited_by_count":246,"citation_normalized_percentile":{"value":0.9996152,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"19","issue":"13","first_page":"1650","last_page":"1655"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10534","display_name":"Structural Health Monitoring Techniques","score":0.968500018119812,"subfield":{"id":"https://openalex.org/subfields/2205","display_name":"Civil and Structural Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10534","display_name":"Structural Health Monitoring Techniques","score":0.968500018119812,"subfield":{"id":"https://openalex.org/subfields/2205","display_name":"Civil and Structural Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10057","display_name":"Face and Expression Recognition","score":0.9556000232696533,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12111","display_name":"Industrial Vision Systems and Defect Detection","score":0.9329000115394592,"subfield":{"id":"https://openalex.org/subfields/2209","display_name":"Industrial and Manufacturing Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7128293514251709},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.6909722089767456},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4247041642665863},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40733662247657776},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.350149005651474}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7128293514251709},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.6909722089767456},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4247041642665863},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40733662247657776},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.350149005651474}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btg223","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg223","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/13/1650/48930074/bioinformatics_19_13_1650.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.411.6901","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.411.6901","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cbio.ensmp.fr/~jvert/svn/bibli/local/Ward2003Secondary.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.424.2971","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.424.2971","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/19/13/1650.full.pdf","raw_type":"text"},{"id":"pmh:oai:centaur.reading.ac.uk:27435","is_oa":false,"landing_page_url":"https://centaur.reading.ac.uk/27435/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402273","display_name":"CentAUR (University of Reading)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71052956","host_organization_name":"University of Reading","host_organization_lineage":["https://openalex.org/I71052956"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:13360","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/13360/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   Bioinformatics , 19  (13)   pp. 1650-1655.   (2003)      ","raw_type":"Article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:155651","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/155651/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   BIOINFORMATICS , 19  (13)   1650 - 1655.   (2003)      ","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg223","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg223","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/13/1650/48930074/bioinformatics_19_13_1650.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.7099999785423279}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128801478.pdf","grobid_xml":"https://content.openalex.org/works/W2128801478.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1549656520","https://openalex.org/W1554663460","https://openalex.org/W1563088657","https://openalex.org/W1576520375","https://openalex.org/W1618905105","https://openalex.org/W1985818354","https://openalex.org/W1993619806","https://openalex.org/W2008708467","https://openalex.org/W2019575783","https://openalex.org/W2101220662","https://openalex.org/W2102794349","https://openalex.org/W2104867159","https://openalex.org/W2104972430","https://openalex.org/W2114281975","https://openalex.org/W2122945697","https://openalex.org/W2139212933","https://openalex.org/W2139592083","https://openalex.org/W2140244239","https://openalex.org/W2143908786","https://openalex.org/W2147905080","https://openalex.org/W2148603752","https://openalex.org/W2153187042","https://openalex.org/W2156135142","https://openalex.org/W2156798505","https://openalex.org/W2158714788","https://openalex.org/W2172000360","https://openalex.org/W2399215454"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347","https://openalex.org/W4210805261"],"abstract_inverted_index":{"Abstract":[0],"Motivation:":[1],"A":[2,124],"new":[3],"method":[4,29,108,158],"that":[5],"uses":[6],"support":[7],"vector":[8],"machines":[9],"(SVMs)":[10],"to":[11,24,35,41,52,66,84,103,155,162],"predict":[12,67],"protein":[13,78],"secondary":[14,69],"structure":[15],"is":[16,22,80,146,152],"described":[17],"and":[18,34,131,161],"evaluated.":[19],"The":[20,58,72,99,143],"study":[21],"designed":[23],"develop":[25],"a":[26,90,110],"reliable":[27],"prediction":[28,75,107,136],"using":[30],"an":[31],"alternative":[32],"technique":[33],"investigate":[36],"the":[37,104,128,139,149,157,164,168],"applicability":[38],"of":[39,44,95,114,127],"SVMs":[40,49],"this":[42],"type":[43],"bioinformatics":[45],"problem.":[46],"Methods:":[47],"Binary":[48],"are":[50,61],"trained":[51,119],"discriminate":[53],"between":[54],"two":[55],"structural":[56],"classes.":[57],"binary":[59],"classifiers":[60],"combined":[62],"in":[63,153],"several":[64],"ways":[65],"multi-class":[68],"structure.":[70],"Results:":[71],"average":[73],"three-state":[74],"accuracy":[76,137],"per":[77],"(Q3)":[79],"estimated":[81],"by":[82],"cross-validation":[83],"be":[85],"77.07":[86],"\u00b1":[87,97],"0.26%":[88],"with":[89],"segment":[91],"overlap":[92],"(Sov)":[93],"score":[94],"73.32":[96],"0.39%.":[98],"SVM":[100,144,165],"performs":[101],"similarly":[102],"'state-of-the-art'":[105],"PSIPRED":[106,130,169],"on":[109,120],"non-homologous":[111],"test":[112],"set":[113],"121":[115],"proteins":[116],"despite":[117],"being":[118],"substantially":[121],"fewer":[122],"examples.":[123],"simple":[125],"consensus":[126],"SVM,":[129],"PROFsec":[132],"achieves":[133],"significantly":[134],"higher":[135],"than":[138],"individual":[140],"methods.":[141],"Availability:":[142],"classifier":[145],"available":[147,159],"from":[148],"authors.":[150],"Work":[151],"progress":[154],"make":[156],"on-line":[160],"integrate":[163],"predictions":[166],"into":[167],"server.":[170]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":16}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
