{"id":"https://openalex.org/W2166778953","doi":"https://doi.org/10.1093/bioinformatics/btg071","title":"GAAS: Gene Array Analyzer Software for management, analysis and visualization of gene expression data","display_name":"GAAS: Gene Array Analyzer Software for management, analysis and visualization of gene expression data","publication_year":2003,"publication_date":"2003-04-11","ids":{"openalex":"https://openalex.org/W2166778953","doi":"https://doi.org/10.1093/bioinformatics/btg071","mag":"2166778953","pmid":"https://pubmed.ncbi.nlm.nih.gov/12691991"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg071","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/6/774/48903882/bioinformatics_19_6_774.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/19/6/774/48903882/bioinformatics_19_6_774.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085346183","display_name":"Marco Masseroli","orcid":"https://orcid.org/0000-0003-2574-1174"},"institutions":[{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"M. Masseroli","raw_affiliation_strings":["Bioengineering Department, Politecnico di Milano, I-20133 Milano, Italy. masseroli@biomed.polimi.it","Bioengineering Department, Politecnico di Milano, I-20133 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Department, Politecnico di Milano, I-20133 Milano, Italy. masseroli@biomed.polimi.it","institution_ids":["https://openalex.org/I93860229"]},{"raw_affiliation_string":"Bioengineering Department, Politecnico di Milano, I-20133 Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079877840","display_name":"Pietro Cerveri","orcid":"https://orcid.org/0000-0003-3995-8673"},"institutions":[{"id":"https://openalex.org/I4210116940","display_name":"Don Carlo Gnocchi Foundation","ror":"https://ror.org/02e3ssq97","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210116940"]},{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"P. Cerveri","raw_affiliation_strings":["Bioengineering Center, Fondazione Don Gnocchi IRCCS ONLUS, I-20148 Milano, Italy,","Bioengineering Department, Politecnico di Milano, I-20133 Milano, Italy,","Bioengineering Center, Fondazione Don Gnocchi IRCCS ONLUS, I-20148 Milano, Italy","Bioengineering Department, Politecnico di Milano, I-20133 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Center, Fondazione Don Gnocchi IRCCS ONLUS, I-20148 Milano, Italy,","institution_ids":["https://openalex.org/I4210116940"]},{"raw_affiliation_string":"Bioengineering Department, Politecnico di Milano, I-20133 Milano, Italy,","institution_ids":["https://openalex.org/I93860229"]},{"raw_affiliation_string":"Bioengineering Center, Fondazione Don Gnocchi IRCCS ONLUS, I-20148 Milano, Italy","institution_ids":["https://openalex.org/I4210116940"]},{"raw_affiliation_string":"Bioengineering Department, Politecnico di Milano, I-20133 Milano, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057101865","display_name":"Pier Giuseppe Pelicci","orcid":"https://orcid.org/0000-0002-5076-2316"},"institutions":[{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"P.G. Pelicci","raw_affiliation_strings":["IEO -European Institute of Oncology, I-20139 Milano, Italy and","IEO -European Institute of Oncology, I-20139 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IEO -European Institute of Oncology, I-20139 Milano, Italy and","institution_ids":["https://openalex.org/I6141010"]},{"raw_affiliation_string":"IEO -European Institute of Oncology, I-20139 Milano, Italy","institution_ids":["https://openalex.org/I6141010"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080246257","display_name":"Myriam Alcalay","orcid":"https://orcid.org/0000-0002-5558-4272"},"institutions":[{"id":"https://openalex.org/I4210114103","display_name":"IFOM","ror":"https://ror.org/02hcsa680","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210114103"]},{"id":"https://openalex.org/I6141010","display_name":"European Institute of Oncology","ror":"https://ror.org/02vr0ne26","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210153126","https://openalex.org/I6141010"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"M. Alcalay","raw_affiliation_strings":["IEO -European Institute of Oncology, I-20139 Milano, Italy and","IFOM -FIRC Institute of Molecular Oncology, I-20139 Milano, Italy","IEO -European Institute of Oncology, I-20139 Milano, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IEO -European Institute of Oncology, I-20139 Milano, Italy and","institution_ids":["https://openalex.org/I6141010"]},{"raw_affiliation_string":"IFOM -FIRC Institute of Molecular Oncology, I-20139 Milano, Italy","institution_ids":["https://openalex.org/I4210114103"]},{"raw_affiliation_string":"IEO -European Institute of Oncology, I-20139 Milano, Italy","institution_ids":["https://openalex.org/I6141010"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5085346183"],"corresponding_institution_ids":["https://openalex.org/I93860229"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.7594,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.69124627,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"19","issue":"6","first_page":"774","last_page":"775"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6712832450866699},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6135434508323669},{"id":"https://openalex.org/keywords/spectrum-analyzer","display_name":"Spectrum analyzer","score":0.5652694702148438},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5423181653022766},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5349456071853638},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5122503638267517},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5094695687294006},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4256812334060669},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3621385097503662},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3556068539619446},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.304263710975647},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15862274169921875},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.08844509720802307}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6712832450866699},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6135434508323669},{"id":"https://openalex.org/C158007255","wikidata":"https://www.wikidata.org/wiki/Q1055222","display_name":"Spectrum analyzer","level":2,"score":0.5652694702148438},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5423181653022766},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5349456071853638},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5122503638267517},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5094695687294006},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4256812334060669},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3621385097503662},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3556068539619446},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.304263710975647},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15862274169921875},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.08844509720802307}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btg071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg071","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/6/774/48903882/bioinformatics_19_6_774.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:12691991","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12691991","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:re.public.polimi.it:11311/556320","is_oa":false,"landing_page_url":"http://hdl.handle.net/11311/556320","pdf_url":null,"source":{"id":"https://openalex.org/S4306400312","display_name":"Virtual Community of Pathological Anatomy (University of Castilla La Mancha)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79189158","host_organization_name":"University of Castilla-La Mancha","host_organization_lineage":["https://openalex.org/I79189158"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:100601","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/100601","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg071","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/6/774/48903882/bioinformatics_19_6_774.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166778953.pdf","grobid_xml":"https://content.openalex.org/works/W2166778953.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W1965843937","https://openalex.org/W2065912508","https://openalex.org/W2100668965","https://openalex.org/W2158096909","https://openalex.org/W4232763998"],"related_works":["https://openalex.org/W2052655934","https://openalex.org/W104645380","https://openalex.org/W2027213253","https://openalex.org/W2017047508","https://openalex.org/W2165201120","https://openalex.org/W2023641020","https://openalex.org/W2188530857","https://openalex.org/W2133040682","https://openalex.org/W1971081588","https://openalex.org/W2041199873"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"GAAS,":[2],"Gene":[3],"Array":[4],"Analyzer":[5],"Software":[6],"supports":[7],"multi-user":[8,35],"efficient":[9],"management":[10,25],"and":[11,51,62,74,89],"suitable":[12],"analyses":[13,71],"of":[14,17,53,79],"large":[15],"amounts":[16],"gene":[18,69],"expression":[19,70,80],"data":[20,29,44,66],"across":[21],"replicated":[22],"experiments.":[23,77],"Its":[24],"framework":[26],"handles":[27],"input":[28],"generated":[30],"by":[31],"different":[32],"technologies.":[33],"A":[34],"environment":[36],"allows":[37],"each":[38],"user":[39],"to":[40],"store":[41],"his/her":[42],"own":[43],"visualization":[45],"scheme,":[46],"analysis":[47,58],"parameters":[48],"used,":[49],"values":[50],"formats":[52],"the":[54],"output":[55,92],"data.":[56],"The":[57],"engine":[59],"performs:":[60],"background":[61],"spot":[63],"quality":[64],"evaluation,":[65],"normalization,":[67],"differential":[68],"in":[72],"single":[73],"multiple":[75],"replica":[76],"Results":[78],"profiles":[81],"can":[82],"be":[83,106],"interactively":[84],"navigated":[85],"through":[86],"graphical":[87],"interfaces":[88],"stored":[90],"into":[91],"databases.":[93],"Availability:":[94],"http://www.medinfopoli.polimi.it/GAAS/":[95,100],"Contact:":[96],"masseroli@biomed.polimi.it":[97],"Supplementary":[98],"information:":[99],"*":[101],"To":[102],"whom":[103],"correspondence":[104],"should":[105],"addressed.":[107]},"counts_by_year":[{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
