{"id":"https://openalex.org/W2138844251","doi":"https://doi.org/10.1093/bioinformatics/btg052","title":"Java editor for biological pathways","display_name":"Java editor for biological pathways","publication_year":2003,"publication_date":"2003-04-11","ids":{"openalex":"https://openalex.org/W2138844251","doi":"https://doi.org/10.1093/bioinformatics/btg052","mag":"2138844251","pmid":"https://pubmed.ncbi.nlm.nih.gov/12691997"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg052","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/6/786/48903858/bioinformatics_19_6_786.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/19/6/786/48903858/bioinformatics_19_6_786.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058588499","display_name":"Elmar Trost","orcid":null},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Elmar Trost","raw_affiliation_strings":["Institute of Biomedical Engineering and Christian Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Krenngasse 37, 8010 Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Engineering and Christian Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Krenngasse 37, 8010 Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052246323","display_name":"Hubert Hackl","orcid":"https://orcid.org/0000-0003-4055-3841"},"institutions":[{"id":"https://openalex.org/I15766117","display_name":"University of Graz","ror":"https://ror.org/01faaaf77","country_code":"AT","type":"education","lineage":["https://openalex.org/I15766117"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Hubert Hackl","raw_affiliation_strings":["Institute of Biomedical Engineering and Christian Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Krenngasse 37, 8010 Graz, Austria","Institute of Biomedical Engineering and Christian Doppler#N#Laboratory for Genomics and Bioinformatics, Graz University of#N#Technology, Krenngasse 37, 8010 Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Engineering and Christian Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Krenngasse 37, 8010 Graz, Austria","institution_ids":["https://openalex.org/I4092182"]},{"raw_affiliation_string":"Institute of Biomedical Engineering and Christian Doppler#N#Laboratory for Genomics and Bioinformatics, Graz University of#N#Technology, Krenngasse 37, 8010 Graz, Austria","institution_ids":["https://openalex.org/I15766117"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103173206","display_name":"Michael Maurer","orcid":"https://orcid.org/0000-0002-7857-8721"},"institutions":[{"id":"https://openalex.org/I15766117","display_name":"University of Graz","ror":"https://ror.org/01faaaf77","country_code":"AT","type":"education","lineage":["https://openalex.org/I15766117"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Michael Maurer","raw_affiliation_strings":["Institute of Biomedical Engineering and Christian Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Krenngasse 37, 8010 Graz, Austria","Institute of Biomedical Engineering and Christian Doppler#N#Laboratory for Genomics and Bioinformatics, Graz University of#N#Technology, Krenngasse 37, 8010 Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Engineering and Christian Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Krenngasse 37, 8010 Graz, Austria","institution_ids":["https://openalex.org/I4092182"]},{"raw_affiliation_string":"Institute of Biomedical Engineering and Christian Doppler#N#Laboratory for Genomics and Bioinformatics, Graz University of#N#Technology, Krenngasse 37, 8010 Graz, Austria","institution_ids":["https://openalex.org/I15766117"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084751312","display_name":"Zlatko Trajanoski","orcid":"https://orcid.org/0000-0002-0636-7351"},"institutions":[{"id":"https://openalex.org/I15766117","display_name":"University of Graz","ror":"https://ror.org/01faaaf77","country_code":"AT","type":"education","lineage":["https://openalex.org/I15766117"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Zlatko Trajanoski","raw_affiliation_strings":["Institute of Biomedical Engineering and Christian Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Krenngasse 37, 8010 Graz, Austria","Institute of Biomedical Engineering and Christian Doppler#N#Laboratory for Genomics and Bioinformatics, Graz University of#N#Technology, Krenngasse 37, 8010 Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Engineering and Christian Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Krenngasse 37, 8010 Graz, Austria","institution_ids":["https://openalex.org/I4092182"]},{"raw_affiliation_string":"Institute of Biomedical Engineering and Christian Doppler#N#Laboratory for Genomics and Bioinformatics, Graz University of#N#Technology, Krenngasse 37, 8010 Graz, Austria","institution_ids":["https://openalex.org/I15766117"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5058588499"],"corresponding_institution_ids":["https://openalex.org/I4092182"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0294,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.74945134,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"19","issue":"6","first_page":"786","last_page":"787"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8126215934753418},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.770422101020813},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.729698896408081},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.7255545854568481},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5386561751365662},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5306013226509094},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.45549142360687256},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.43714338541030884},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.41018858551979065},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3372054696083069},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.2749287188053131},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14416390657424927},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09130609035491943}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8126215934753418},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.770422101020813},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.729698896408081},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.7255545854568481},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5386561751365662},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5306013226509094},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.45549142360687256},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.43714338541030884},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.41018858551979065},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3372054696083069},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.2749287188053131},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14416390657424927},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09130609035491943}],"mesh":[{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008660","descriptor_name":"Metabolism","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015443","descriptor_name":"Word Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015443","descriptor_name":"Word Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015443","descriptor_name":"Word Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019146","descriptor_name":"Hypermedia","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btg052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg052","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/6/786/48903858/bioinformatics_19_6_786.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:12691997","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12691997","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.911.7462","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.911.7462","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/19/6/786.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg052","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/6/786/48903858/bioinformatics_19_6_786.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321004","display_name":"\u00d6sterreichischen Akademie der Wissenschaften","ror":"https://ror.org/03anc3s24"},{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138844251.pdf","grobid_xml":"https://content.openalex.org/works/W2138844251.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W2083105784","https://openalex.org/W2112012991","https://openalex.org/W2113024448","https://openalex.org/W2133298156","https://openalex.org/W2137439611","https://openalex.org/W2140000393"],"related_works":["https://openalex.org/W2528467228","https://openalex.org/W1521911848","https://openalex.org/W2347442628","https://openalex.org/W1503760549","https://openalex.org/W1772728300","https://openalex.org/W2002787305","https://openalex.org/W1597555987","https://openalex.org/W2468540540","https://openalex.org/W123037173","https://openalex.org/W4235947022"],"abstract_inverted_index":{"A":[0],"visual":[1],"Java-based":[2],"tool":[3,13],"for":[4,81,90],"drawing":[5,26],"and":[6,58,65,84],"annotating":[7],"biological":[8],"pathways":[9],"was":[10],"developed.":[11],"This":[12],"integrates":[14],"the":[15,50,53,71,82,91],"possibilities":[16],"of":[17,52,70],"charting":[18],"elements":[19,29],"with":[20],"different":[21],"attributes":[22],"(size,":[23],"color,":[24],"labels),":[25],"connections":[27],"between":[28],"in":[30],"distinct":[31],"characteristics":[32],"(color,":[33],"structure,":[34],"width,":[35],"arrows),":[36],"as":[37,39],"well":[38],"adding":[40],"links":[41],"to":[42,63],"molecular":[43],"biology":[44],"databases,":[45],"promoter":[46],"sequences,":[47],"information":[48],"on":[49],"function":[51],"genes":[54],"or":[55],"gene":[56],"products,":[57],"references.":[59],"It":[60],"is":[61,74],"easy":[62],"use":[64],"system":[66],"independent.":[67],"The":[68],"result":[69],"editing":[72],"process":[73],"a":[75],"PNG":[76],"(portable":[77],"network":[78],"graphics)":[79],"file":[80,89],"images":[83],"XML":[85],"(extended":[86],"markup":[87],"language)":[88],"appropriate":[92],"links.":[93]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
