{"id":"https://openalex.org/W2171963266","doi":"https://doi.org/10.1093/bioinformatics/btg005","title":"Alignment-free sequence comparison\u2014a review","display_name":"Alignment-free sequence comparison\u2014a review","publication_year":2003,"publication_date":"2003-02-28","ids":{"openalex":"https://openalex.org/W2171963266","doi":"https://doi.org/10.1093/bioinformatics/btg005","mag":"2171963266","pmid":"https://pubmed.ncbi.nlm.nih.gov/12611807"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btg005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/4/513/48903972/bioinformatics_19_4_513.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/19/4/513/48903972/bioinformatics_19_4_513.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005271169","display_name":"Susana Vinga","orcid":"https://orcid.org/0000-0002-1954-5487"},"institutions":[{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Susana Vinga","raw_affiliation_strings":["Department of Biometry & Epidemiology, Medical University of South Carolina, 135 Cannon Street, Suite 303, PO Box 250835, Charleston, SC 29425, USA","Biomathematics Group, ITQB-Universidad Nova Lisboa, PO Box 127, 2780-156 Oeiras, Portugal"],"affiliations":[{"raw_affiliation_string":"Department of Biometry & Epidemiology, Medical University of South Carolina, 135 Cannon Street, Suite 303, PO Box 250835, Charleston, SC 29425, USA","institution_ids":[]},{"raw_affiliation_string":"Biomathematics Group, ITQB-Universidad Nova Lisboa, PO Box 127, 2780-156 Oeiras, Portugal","institution_ids":["https://openalex.org/I83558840"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012322429","display_name":"Jonas S. Almeida","orcid":"https://orcid.org/0000-0002-7883-7922"},"institutions":[{"id":"https://openalex.org/I153297377","display_name":"Medical University of South Carolina","ror":"https://ror.org/012jban78","country_code":"US","type":"education","lineage":["https://openalex.org/I153297377"]},{"id":"https://openalex.org/I4210115238","display_name":"Zimmer Biomet (United States)","ror":"https://ror.org/02bn55144","country_code":"US","type":"company","lineage":["https://openalex.org/I4210115238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonas Almeida","raw_affiliation_strings":["Department of Biometry & Epidemiology, Medical University of South Carolina, 135 Cannon Street, Suite 303, PO Box 250835, Charleston, SC 29425, USA and"],"affiliations":[{"raw_affiliation_string":"Department of Biometry & Epidemiology, Medical University of South Carolina, 135 Cannon Street, Suite 303, PO Box 250835, Charleston, SC 29425, USA and","institution_ids":["https://openalex.org/I153297377","https://openalex.org/I4210115238"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5005271169"],"corresponding_institution_ids":["https://openalex.org/I83558840"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.8631,"has_fulltext":true,"cited_by_count":829,"citation_normalized_percentile":{"value":0.97878475,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"19","issue":"4","first_page":"513","last_page":"523"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6848519444465637},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6650422811508179},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3578858971595764},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13790196180343628},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13291671872138977}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6848519444465637},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6650422811508179},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3578858971595764},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13790196180343628},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13291671872138977}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btg005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/4/513/48903972/bioinformatics_19_4_513.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:12611807","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12611807","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.329.9329","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.329.9329","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/19/4/513.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btg005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btg005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/19/4/513/48903972/bioinformatics_19_4_513.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5299999713897705}],"awards":[{"id":"https://openalex.org/G3284537356","display_name":null,"funder_award_id":"SFRH/B","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5226653915","display_name":null,"funder_award_id":"FCT/MCT","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5818630289","display_name":null,"funder_award_id":"SFRH/BD/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G724804869","display_name":null,"funder_award_id":"SFRH/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G769346256","display_name":null,"funder_award_id":"financial support","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G943999617","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2171963266.pdf","grobid_xml":"https://content.openalex.org/works/W2171963266.grobid-xml"},"referenced_works_count":85,"referenced_works":["https://openalex.org/W19996625","https://openalex.org/W21816278","https://openalex.org/W154905459","https://openalex.org/W288453866","https://openalex.org/W1510807444","https://openalex.org/W1528775617","https://openalex.org/W1545748428","https://openalex.org/W1546639740","https://openalex.org/W1558365920","https://openalex.org/W1638203394","https://openalex.org/W1712735699","https://openalex.org/W1810898805","https://openalex.org/W1968467471","https://openalex.org/W1969234006","https://openalex.org/W1973243276","https://openalex.org/W1980638009","https://openalex.org/W1982114217","https://openalex.org/W1987820419","https://openalex.org/W1990061958","https://openalex.org/W1990565597","https://openalex.org/W1995875735","https://openalex.org/W1997455636","https://openalex.org/W1998310788","https://openalex.org/W1998690237","https://openalex.org/W1998852098","https://openalex.org/W2001876799","https://openalex.org/W2002566401","https://openalex.org/W2015292449","https://openalex.org/W2016017944","https://openalex.org/W2033904185","https://openalex.org/W2035483212","https://openalex.org/W2037060512","https://openalex.org/W2037430361","https://openalex.org/W2038656847","https://openalex.org/W2041397659","https://openalex.org/W2044442377","https://openalex.org/W2053392780","https://openalex.org/W2055043387","https://openalex.org/W2055445955","https://openalex.org/W2057177664","https://openalex.org/W2065315036","https://openalex.org/W2067092688","https://openalex.org/W2068448872","https://openalex.org/W2072026826","https://openalex.org/W2074231493","https://openalex.org/W2075950471","https://openalex.org/W2078717565","https://openalex.org/W2087064593","https://openalex.org/W2088481034","https://openalex.org/W2091084070","https://openalex.org/W2097706568","https://openalex.org/W2098475202","https://openalex.org/W2099111195","https://openalex.org/W2107430022","https://openalex.org/W2108278098","https://openalex.org/W2117328480","https://openalex.org/W2118511388","https://openalex.org/W2123838014","https://openalex.org/W2124367310","https://openalex.org/W2125598538","https://openalex.org/W2129103781","https://openalex.org/W2131608588","https://openalex.org/W2136390306","https://openalex.org/W2143210482","https://openalex.org/W2143642163","https://openalex.org/W2144759860","https://openalex.org/W2150483253","https://openalex.org/W2158714788","https://openalex.org/W2163097179","https://openalex.org/W2166162901","https://openalex.org/W2317200546","https://openalex.org/W2320748401","https://openalex.org/W2334744046","https://openalex.org/W2612166593","https://openalex.org/W2947000318","https://openalex.org/W2993383518","https://openalex.org/W3090501935","https://openalex.org/W3214380909","https://openalex.org/W4230960895","https://openalex.org/W4233359534","https://openalex.org/W4236236547","https://openalex.org/W4245668478","https://openalex.org/W4251919163","https://openalex.org/W4252112222","https://openalex.org/W4300906944"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"Most":[0],"of":[1],"the":[2],"alignment-free":[3],"algorithms":[4],"reviewed":[5],"were":[6],"implemented":[7],"in":[8],"MATLAB":[9],"code":[10],"and":[11],"are":[12],"available":[13],"at":[14],"http://bioinformatics.musc.edu/resources.html":[15]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":25},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":33},{"year":2021,"cited_by_count":50},{"year":2020,"cited_by_count":56},{"year":2019,"cited_by_count":49},{"year":2018,"cited_by_count":42},{"year":2017,"cited_by_count":53},{"year":2016,"cited_by_count":62},{"year":2015,"cited_by_count":43},{"year":2014,"cited_by_count":47},{"year":2013,"cited_by_count":54},{"year":2012,"cited_by_count":40}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
