{"id":"https://openalex.org/W4389243728","doi":"https://doi.org/10.1093/bioinformatics/btag521","title":"Graph-KIR: graph-based KIR copy number estimation and allele calling using short-read sequencing data","display_name":"Graph-KIR: graph-based KIR copy number estimation and allele calling using short-read sequencing data","publication_year":2026,"publication_date":"2026-07-01","ids":{"openalex":"https://openalex.org/W4389243728","doi":"https://doi.org/10.1093/bioinformatics/btag521","pmid":"https://pubmed.ncbi.nlm.nih.gov/42478776"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btag521","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag521","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btag521","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029681973","display_name":"Hong-Ye Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I118292597","display_name":"National Taipei University of Technology","ror":"https://ror.org/00cn92c09","country_code":"TW","type":"education","lineage":["https://openalex.org/I118292597"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hong-Ye Lin","raw_affiliation_strings":["Department of Biomechatronics Engineering, National Taiwan University , Taipei 10617,","Department of Biomechatronics Engineering, National Taiwan University, National Taiwan University, Taipei 067, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomechatronics Engineering, National Taiwan University , Taipei 10617,","institution_ids":["https://openalex.org/I118292597"]},{"raw_affiliation_string":"Department of Biomechatronics Engineering, National Taiwan University, National Taiwan University, Taipei 067, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058977103","display_name":"Wang Ting-jian","orcid":null},"institutions":[{"id":"https://openalex.org/I118292597","display_name":"National Taipei University of Technology","ror":"https://ror.org/00cn92c09","country_code":"TW","type":"education","lineage":["https://openalex.org/I118292597"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ting-Jian Wang","raw_affiliation_strings":["Department of Biomechatronics Engineering, National Taiwan University , Taipei 10617,","Graduate Institute of Medical Genomics and Proteomics, National Taiwan University, Taipei 10055, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomechatronics Engineering, National Taiwan University , Taipei 10617,","institution_ids":["https://openalex.org/I118292597"]},{"raw_affiliation_string":"Graduate Institute of Medical Genomics and Proteomics, National Taiwan University, Taipei 10055, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103150786","display_name":"Tsung-Kai Hung","orcid":"https://orcid.org/0000-0002-2051-0783"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ting-Yu Chang","raw_affiliation_strings":["Graduate Institute of Medical Genomics and Proteomics, National Taiwan University , Taipei 10055,","Graduate Institute of Medical Genomics and Proteomics, National Taiwan University, Taipei 10055, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Institute of Medical Genomics and Proteomics, National Taiwan University , Taipei 10055,","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Graduate Institute of Medical Genomics and Proteomics, National Taiwan University, Taipei 10055, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006385901","display_name":"Hui-Wen Chuang","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hui-Wen Chuang","raw_affiliation_strings":["Graduate Institute of Medical Genomics and Proteomics, National Taiwan University , Taipei 10055,","Department of Biomechatronics Engineering, National Taiwan University, National Taiwan University, Taipei 067, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Institute of Medical Genomics and Proteomics, National Taiwan University , Taipei 10055,","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Department of Biomechatronics Engineering, National Taiwan University, National Taiwan University, Taipei 067, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103150786","display_name":"Tsung-Kai Hung","orcid":"https://orcid.org/0000-0002-2051-0783"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Tsung-Kai Hung","raw_affiliation_strings":["Graduate Institute of Medical Genomics and Proteomics, National Taiwan University , Taipei 10055,","Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei 10617, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Institute of Medical Genomics and Proteomics, National Taiwan University , Taipei 10055,","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei 10617, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104206773","display_name":"Ching-Jim Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ching-Jim Lin","raw_affiliation_strings":["Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University , Taipei 10617,","Graduate Institute of Medical Genomics and Proteomics, National Taiwan University, Taipei 10055, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University , Taipei 10617,","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Graduate Institute of Medical Genomics and Proteomics, National Taiwan University, Taipei 10055, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033886049","display_name":"Chia\u2010Lang Hsu","orcid":"https://orcid.org/0000-0002-7447-8045"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210131804","display_name":"National Taiwan University Hospital","ror":"https://ror.org/03nteze27","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I4210131804"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jacob Shujui Hsu","raw_affiliation_strings":["Graduate Institute of Medical Genomics and Proteomics, National Taiwan University , Taipei 10055,","Department of Medical Research, National Taiwan University Hospital, Taipei 10002, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Institute of Medical Genomics and Proteomics, National Taiwan University , Taipei 10055,","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Department of Medical Research, National Taiwan University Hospital, Taipei 10002, Taiwan","institution_ids":["https://openalex.org/I4210131804"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5141359751","display_name":"Chia-Lang Hsu","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I2802331550","display_name":"Taipei Medical University Hospital","ror":"https://ror.org/03k0md330","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2802331550"]},{"id":"https://openalex.org/I4210131804","display_name":"National Taiwan University Hospital","ror":"https://ror.org/03nteze27","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I4210131804"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chia-Lang Hsu","raw_affiliation_strings":["Department of Medical Research, National Taiwan University Hospital , Taipei 10002,","Department of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University, Taipei 10048, Taiwan"],"raw_orcid":"https://orcid.org/0000-0002-7447-8045","affiliations":[{"raw_affiliation_string":"Department of Medical Research, National Taiwan University Hospital , Taipei 10002,","institution_ids":["https://openalex.org/I2802331550","https://openalex.org/I4210131804"]},{"raw_affiliation_string":"Department of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University, Taipei 10048, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101448213","display_name":"Ya\u2010Chien Yang","orcid":"https://orcid.org/0000-0002-9981-210X"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I47519274","display_name":"Taipei Medical University","ror":"https://ror.org/05031qk94","country_code":"TW","type":"education","lineage":["https://openalex.org/I47519274"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ya-Chien Yang","raw_affiliation_strings":["Department of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University College of Medicine , Taipei 10051,","Graduate Institute of Medical Genomics and Proteomics, National Taiwan University, Taipei 10055, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University College of Medicine , Taipei 10051,","institution_ids":["https://openalex.org/I47519274"]},{"raw_affiliation_string":"Graduate Institute of Medical Genomics and Proteomics, National Taiwan University, Taipei 10055, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100710720","display_name":"Chien\u2010Yu Chen","orcid":"https://orcid.org/0000-0002-6940-6389"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Pei-Lung Chen","raw_affiliation_strings":["Graduate Institute of Medical Genomics and Proteomics, National Taiwan University , Taipei 10055,","Department of Biomechatronics Engineering, National Taiwan University, National Taiwan University, Taipei 067, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Institute of Medical Genomics and Proteomics, National Taiwan University , Taipei 10055,","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Department of Biomechatronics Engineering, National Taiwan University, National Taiwan University, Taipei 067, Taiwan","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100710720","display_name":"Chien\u2010Yu Chen","orcid":"https://orcid.org/0000-0002-6940-6389"},"institutions":[{"id":"https://openalex.org/I118292597","display_name":"National Taipei University of Technology","ror":"https://ror.org/00cn92c09","country_code":"TW","type":"education","lineage":["https://openalex.org/I118292597"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chien-Yu Chen","raw_affiliation_strings":["Department of Biomechatronics Engineering, National Taiwan University , Taipei 10617,"],"raw_orcid":"https://orcid.org/0000-0002-6940-6389","affiliations":[{"raw_affiliation_string":"Department of Biomechatronics Engineering, National Taiwan University , Taipei 10617,","institution_ids":["https://openalex.org/I118292597"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100710720"],"corresponding_institution_ids":["https://openalex.org/I16733864"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.00067527,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"42","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11020","display_name":"Immune Cell Function and Interaction","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.506093442440033},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.49551665782928467},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.45183950662612915},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.44712409377098083},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.43013450503349304},{"id":"https://openalex.org/keywords/typing","display_name":"Typing","score":0.4280069172382355},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4163544178009033},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3389855921268463},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.06913650035858154}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.506093442440033},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.49551665782928467},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.45183950662612915},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.44712409377098083},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.43013450503349304},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.4280069172382355},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4163544178009033},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3389855921268463},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.06913650035858154}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018628","descriptor_name":"Gene Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018628","descriptor_name":"Gene Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018628","descriptor_name":"Gene Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054340","descriptor_name":"Receptors, KIR","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054340","descriptor_name":"Receptors, KIR","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D054340","descriptor_name":"Receptors, KIR","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btag521","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag521","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"doi:10.1101/2023.11.29.568665","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1101/2023.11.29.568665","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2023/12/01/2023.11.29.568665.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:42478776","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42478776","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13423236","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13423236/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btag521","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag521","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G2668550179","display_name":"Effect Simulation of Non-Coding Variants Based on Single-Cell Paired Epigenome-Transcriptome Sequencing Data","funder_award_id":"NSTC112-2221-E002-184-MY3","funder_id":"https://openalex.org/F2461203286","funder_display_name":"National Science and Technology Council"},{"id":"https://openalex.org/G6338769316","display_name":null,"funder_award_id":"111-2221-E-002-166-MY3","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"}],"funders":[{"id":"https://openalex.org/F2461203286","display_name":"National Science and Technology Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320309618","display_name":"Ministry of Science and Technology","ror":"https://ror.org/02b207r52"},{"id":"https://openalex.org/F4320331164","display_name":"National Science and Technology Council","ror":"https://ror.org/00wnb9798"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W2021341670","https://openalex.org/W2058825620","https://openalex.org/W2098318463","https://openalex.org/W2104549677","https://openalex.org/W2108996658","https://openalex.org/W2120462202","https://openalex.org/W2127640118","https://openalex.org/W2150056019","https://openalex.org/W2153989399","https://openalex.org/W2157539385","https://openalex.org/W2159823147","https://openalex.org/W2166894188","https://openalex.org/W2476725372","https://openalex.org/W2770095154","https://openalex.org/W2789843538","https://openalex.org/W2906926620","https://openalex.org/W2913179221","https://openalex.org/W2946946191","https://openalex.org/W2964849163","https://openalex.org/W3012050519","https://openalex.org/W3108111517","https://openalex.org/W3131055609","https://openalex.org/W3137905338","https://openalex.org/W3190200374","https://openalex.org/W4221085153","https://openalex.org/W4224278121","https://openalex.org/W4250200907","https://openalex.org/W4307762725","https://openalex.org/W4388615950","https://openalex.org/W4388713218","https://openalex.org/W4394666350","https://openalex.org/W7073744525"],"related_works":["https://openalex.org/W3176169626","https://openalex.org/W1606200072","https://openalex.org/W2013429256","https://openalex.org/W1981020211","https://openalex.org/W1979674660","https://openalex.org/W4253481923","https://openalex.org/W1989807515","https://openalex.org/W1998706901","https://openalex.org/W2057351134","https://openalex.org/W2410970605"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,22,184,212],"Killer-cell":[2],"Immunoglobulin-like":[3],"Receptor":[4],"(KIR)":[5],"is":[6,88],"a":[7,60,80,108,111],"highly":[8,28],"polymorphic":[9],"region":[10],"in":[11,36,107,121,195],"the":[12,41,101,167],"human":[13],"genome,":[14],"associated":[15],"with":[16,40,97],"autoimmune":[17],"diseases":[18],"and":[19,68,75,125,139,158,179,200,214],"organ":[20],"transplantation.":[21],"sequences":[23],"of":[24,44,90,103,113,128,186,203],"KIR":[25,46,93,204],"genes":[26,205],"are":[27,218],"similar":[29],"among":[30],"star":[31],"alleles":[32,94,202],"as":[33,35,149],"well":[34],"between":[37],"individual":[38],"genes,":[39],"copy":[42,66,122,198],"number":[43,123],"each":[45],"gene":[47,65,106],"typically":[48],"ranging":[49],"from":[50,79,206],"0":[51],"to":[52,63,192],"4.":[53],"In":[54,110],"this":[55],"study,":[56],"we":[57],"introduce":[58],"Graph-KIR,":[59],"tool":[61,191],"designed":[62],"estimate":[64],"numbers":[67,199],"predict":[69],"full-resolution":[70],"(7-digit,":[71],"encompassing":[72],"both":[73],"coding":[74],"non-coding":[76],"sequence":[77],"variations)":[78],"whole":[81],"genome":[82],"sequencing":[83],"(WGS)":[84],"sample.":[85],"RESULTS:":[86],"Graph-KIR":[87,117,144,173,187,213],"capable":[89],"independently":[91],"typing":[92],"per":[95],"sample":[96],"no":[98],"reliance":[99],"on":[100,169],"distribution":[102],"any":[104],"framework":[105],"cohort.":[109],"set":[112],"100":[114],"simulated":[115],"samples,":[116,172],"demonstrated":[118],"99.2%":[119],"accuracy":[120],"estimation":[124],"high":[126],"F1-score":[127,176],"allele":[129],"typing:":[130],"91.79%":[131],"at":[132,136,141,162,181,220],"7-digit":[133,182],"resolution,":[134,138],"97.37%":[135],"5-digit":[137,163],"97.11%":[140],"3-digit":[142],"resolution.":[143,164,183],"outperforms":[145],"existing":[146],"tools":[147],"such":[148],"Geny":[150,178],"(96.39%":[151],"F1-score),":[152,157],"PING's":[153],"WGS":[154,207],"version":[155],"(92.77%":[156],"T1K":[159],"(90.44%":[160],"F1-score)":[161],"By":[165],"analyzing":[166],"results":[168],"44":[170],"HPRC":[171],"achieves":[174],"better":[175],"than":[177],"PING":[180],"release":[185],"adds":[188],"another":[189],"valuable":[190],"assist":[193],"users":[194],"accurately":[196],"estimating":[197],"calling":[201],"samples.":[208],"AVAILABILITY":[209],"AND":[210],"IMPLEMENTATION:":[211],"paper-related":[215],"pipeline":[216],"codes":[217],"available":[219],"https://github.com/linnil1/KIR_graph.":[221]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
