{"id":"https://openalex.org/W4417127886","doi":"https://doi.org/10.1093/bioinformatics/btag363","title":"AEGIS: an annotation extraction and genomic integration resource","display_name":"AEGIS: an annotation extraction and genomic integration resource","publication_year":2026,"publication_date":"2026-06-01","ids":{"openalex":"https://openalex.org/W4417127886","doi":"https://doi.org/10.1093/bioinformatics/btag363","pmid":"https://pubmed.ncbi.nlm.nih.gov/42262904"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btag363","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag363","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btag363","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043123403","display_name":"David Navarro\u2010Pay\u00e1","orcid":"https://orcid.org/0000-0003-1623-3039"},"institutions":[{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"David Navarro-Pay\u00e1","raw_affiliation_strings":["Institute for Integrative Systems Biology (I2SysBio, CSIC-UV) , Valencia, 46980,"],"raw_orcid":"https://orcid.org/0000-0003-1623-3039","affiliations":[{"raw_affiliation_string":"Institute for Integrative Systems Biology (I2SysBio, CSIC-UV) , Valencia, 46980,","institution_ids":["https://openalex.org/I4210152685"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037030597","display_name":"Antonio Santiago","orcid":"https://orcid.org/0000-0002-9180-3241"},"institutions":[{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Antonio Santiago","raw_affiliation_strings":["Institute for Integrative Systems Biology (I2SysBio, CSIC-UV) , Valencia, 46980,","Programa de Doctorado en Biotecnolog\u00eda, Universitat Polit\u00e8cnica de Val\u00e8ncia , Valencia,"],"raw_orcid":"https://orcid.org/0000-0002-9180-3241","affiliations":[{"raw_affiliation_string":"Institute for Integrative Systems Biology (I2SysBio, CSIC-UV) , Valencia, 46980,","institution_ids":["https://openalex.org/I4210152685"]},{"raw_affiliation_string":"Programa de Doctorado en Biotecnolog\u00eda, Universitat Polit\u00e8cnica de Val\u00e8ncia , Valencia,","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041932229","display_name":"Amandine Velt","orcid":"https://orcid.org/0000-0003-2368-839X"},"institutions":[{"id":"https://openalex.org/I4210111068","display_name":"Colmar Inra Research Centre","ror":"https://ror.org/019msr682","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210111068"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Amandine Velt","raw_affiliation_strings":["INRAE-Universit\u00e9 de Strasbourg, SVQV , Colmar, 68000,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRAE-Universit\u00e9 de Strasbourg, SVQV , Colmar, 68000,","institution_ids":["https://openalex.org/I4210111068"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044634229","display_name":"Marco Moretto","orcid":"https://orcid.org/0000-0003-4555-7243"},"institutions":[{"id":"https://openalex.org/I103225651","display_name":"Fondazione Edmund Mach","ror":"https://ror.org/0381bab64","country_code":"IT","type":"other","lineage":["https://openalex.org/I103225651"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Moretto","raw_affiliation_strings":["Unit of Digital Agriculture, Research and Innovation Centre, Fondazione Edmund Mach , San Michele all\u2019Adige, 38098,"],"raw_orcid":"https://orcid.org/0000-0003-4555-7243","affiliations":[{"raw_affiliation_string":"Unit of Digital Agriculture, Research and Innovation Centre, Fondazione Edmund Mach , San Michele all\u2019Adige, 38098,","institution_ids":["https://openalex.org/I103225651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102845454","display_name":"Camille Rustenholz","orcid":"https://orcid.org/0000-0001-5355-3408"},"institutions":[{"id":"https://openalex.org/I4210111068","display_name":"Colmar Inra Research Centre","ror":"https://ror.org/019msr682","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210111068"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Camille Rustenholz","raw_affiliation_strings":["INRAE-Universit\u00e9 de Strasbourg, SVQV , Colmar, 68000,"],"raw_orcid":"https://orcid.org/0000-0001-5355-3408","affiliations":[{"raw_affiliation_string":"INRAE-Universit\u00e9 de Strasbourg, SVQV , Colmar, 68000,","institution_ids":["https://openalex.org/I4210111068"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031789116","display_name":"Jos\u00e9 Tom\u00e1s Matus","orcid":"https://orcid.org/0000-0002-9196-1813"},"institutions":[{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 Tom\u00e1s Matus","raw_affiliation_strings":["Institute for Integrative Systems Biology (I2SysBio, CSIC-UV) , Valencia, 46980,"],"raw_orcid":"https://orcid.org/0000-0002-9196-1813","affiliations":[{"raw_affiliation_string":"Institute for Integrative Systems Biology (I2SysBio, CSIC-UV) , Valencia, 46980,","institution_ids":["https://openalex.org/I4210152685"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5031789116"],"corresponding_institution_ids":["https://openalex.org/I4210152685"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00968179,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.414000004529953,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.414000004529953,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.303600013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.05530000105500221,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7943000197410583},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5842999815940857},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5449000000953674},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4975999891757965},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.48989999294281006},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.4447000026702881},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.41830000281333923},{"id":"https://openalex.org/keywords/disk-formatting","display_name":"Disk formatting","score":0.41690000891685486},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4059000015258789}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7943000197410583},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7462000250816345},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5842999815940857},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5449000000953674},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4975999891757965},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.48989999294281006},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.4447000026702881},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4293999969959259},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.41830000281333923},{"id":"https://openalex.org/C88006597","wikidata":"https://www.wikidata.org/wiki/Q690117","display_name":"Disk formatting","level":2,"score":0.41690000891685486},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4059000015258789},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.40049999952316284},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3723999857902527},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.3700999915599823},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3450999855995178},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.3450999855995178},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.32749998569488525},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2989000082015991},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.2930000126361847},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.289000004529953},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.2879999876022339},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2775000035762787},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.26600000262260437},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.26330000162124634},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.25920000672340393},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.2556999921798706},{"id":"https://openalex.org/C19527686","wikidata":"https://www.wikidata.org/wiki/Q1665453","display_name":"System integration","level":2,"score":0.25459998846054077},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.2529999911785126}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btag363","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag363","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"doi:10.64898/2025.12.04.692274","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2025.12.04.692274","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:42262904","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42262904","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:HAL:hal-05670644v1","is_oa":true,"landing_page_url":"https://hal.inrae.fr/hal-05670644","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2026, 42 (6), &#x27E8;10.1093/bioinformatics/btag363&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13296998","is_oa":true,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42262904/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:riunet.upv.es:10251/237410","is_oa":true,"landing_page_url":"https://riunet.upv.es/handle/10251/237410","pdf_url":null,"source":{"id":"https://openalex.org/S4306400639","display_name":"RiuNet (Universitat Polit\u00e8cnica de Val\u00e8ncia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btag363","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag363","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1422035950","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G1453138094","display_name":null,"funder_award_id":"PID2021-128865NB-I00","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3220251042","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3681454997","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4042783231","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G425668148","display_name":null,"funder_award_id":".13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G451917667","display_name":null,"funder_award_id":"13039/501100011033","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5635532810","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G5967599077","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G6488553235","display_name":null,"funder_award_id":"PROMETEO/2021/056\u201001","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G717256432","display_name":null,"funder_award_id":"PID2024","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G7434936867","display_name":null,"funder_award_id":"PID2021","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G7863371703","display_name":null,"funder_award_id":".13039/501100011033","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G8497050386","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"}],"funders":[{"id":"https://openalex.org/F4320315062","display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades","ror":null},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321864","display_name":"Generalitat Valenciana","ror":"https://ror.org/0097mvx21"},{"id":"https://openalex.org/F4320326634","display_name":"Institut d'Estudis Catalans","ror":"https://ror.org/04b27tr16"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W2021341670","https://openalex.org/W2045204781","https://openalex.org/W2135230723","https://openalex.org/W2168292723","https://openalex.org/W2336957559","https://openalex.org/W2341861303","https://openalex.org/W2903013563","https://openalex.org/W2972815725","https://openalex.org/W2988396470","https://openalex.org/W3113162057","https://openalex.org/W4233582454","https://openalex.org/W4362548950","https://openalex.org/W4399560644","https://openalex.org/W4399651498","https://openalex.org/W4405837012"],"related_works":[],"abstract_inverted_index":{"MOTIVATION:":[0],"Genome":[1],"annotation":[2,125],"files":[3,40],"(GFF3/GTF)":[4],"are":[5,145],"the":[6,114,149],"standard":[7],"for":[8,24,78],"storing":[9],"genomic":[10,48,88],"feature":[11,80],"data,":[12],"yet":[13],"their":[14],"flexibility":[15],"often":[16],"results":[17],"in":[18,139],"formatting":[19],"inconsistencies":[20],"that":[21],"create":[22],"bottlenecks":[23],"downstream":[25],"bioinformatics":[26],"analyses.":[27],"A":[28],"robust,":[29],"unified":[30],"framework":[31],"is":[32,137,163],"required":[33],"to":[34,41,64,104],"parse,":[35,65],"standardise,":[36],"and":[37,44,56,67,86,101,109,127,143,154],"validate":[38],"these":[39],"ensure":[42],"interoperability":[43],"facilitate":[45],"complex":[46,120],"comparative":[47,87],"tasks.":[49],"RESULTS:":[50],"We":[51,112],"present":[52],"AEGIS":[53,74,117,136],"(Annotation":[54],"Extraction":[55],"Genomic":[57],"Integration":[58],"Suite),":[59],"a":[60,156],"comprehensive":[61],"toolkit":[62],"designed":[63],"correct,":[66],"standardise":[68],"genome":[69],"annotations.":[70],"Beyond":[71],"quality":[72],"control,":[73],"provides":[75],"advanced":[76],"modules":[77],"flexible":[79],"extraction":[81],"(e.g.,":[82],"coding":[83],"sequences,":[84],"promoters)":[85],"analysis.":[89],"Uniquely,":[90],"it":[91],"integrates":[92],"multiple":[93],"lines":[94],"of":[95,116],"evidence,":[96],"including":[97],"sequence":[98],"homology,":[99],"synteny,":[100],"coordinate-based":[102],"lift-overs,":[103],"assess":[105],"gene":[106],"model":[107],"correspondence":[108],"infer":[110],"orthology.":[111],"demonstrate":[113],"utility":[115],"by":[118],"quantifying":[119],"structural":[121],"changes":[122],"between":[123],"Arabidopsis":[124],"versions":[126],"identifying":[128],"high-confidence":[129],"orthologues":[130],"across":[131],"diverse":[132],"plant":[133],"genomes.":[134],"AVAILABILITY:":[135],"implemented":[138],"Python.":[140],"Source":[141],"code":[142],"documentation":[144],"freely":[146],"available":[147,165],"under":[148],"GPL-3":[150],"license":[151],"at":[152,159],"https://github.com/Tomsbiolab/aegis":[153],"as":[155],"Docker":[157],"container":[158],"https://hub.docker.com/r/tomsbiolab/aegis.":[160],"The":[161],"package":[162],"also":[164],"on":[166],"PyPI":[167],"(pip":[168],"install":[169],"aegis-bio).":[170]},"counts_by_year":[],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-12-08T00:00:00"}
